Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60445g00003 ATGTATCATCCAAAGAGTGTCCCTAGTTCAAATTTACTTGGAAGCAATTCATTAGTTCATGGTGGTAGCACAATGGATCCTGGCAATGGAGACAATCTTTCCAACAATCCTAATCTCGCCTCAAAGCAGCGTTTACGGTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCACAACTTGGTGGACCAGATCGTGCTACACCAAAAGGTGTTCTAAGAGTTATGGGTGTACAAGGCTTAACGATTTACCATGTGAAAAGTCATTTACAGAAATATCGACTAGCAAAGTACCTACCTGATTCCTCGTCTGATGAAGGAAAGAAAGCTGACAAGAAAGAAGCAGGGGATATGCTTTCCAATCTAGATGGTTCACCTGGGATGCAAATTACTGAAGCACTGAAGCTTCAAATGGAGGTGCAGAAGCGCCTGCATGAACAATTGGAGGTTCAGAGGCAGCTACAATTGAGGATAGAAGCCCAGGGTAAGTACTTGAAGAAGATAATTGAAGAGCAACAGCGACTCAGTGGGACTCTTCCAGGTGCACCCGGCTCTGGGATTACTGGCCAAGTTCCAGAAGATACCTGCCTAGATCCTGATAACAAGACTGATCCGGCAACTCCGGACCCGGAGAAAGCAGCCAAAGAGCGTGCCCCAGCAAAGAGTCTATCCAACGAATCTTTTTCGTCTCACCACGAACCGTTGACACCGGATTCCGGTTCCCCTGCTGACAGCCCCAAAGGGGAGAGATCAACCAAGAGGCAAAAAGTAAGTGCGGAGGCAACATTTTCTAAACCGGATATGGTGCTCCCACATCAGATACTGGAGTCAAGCATGTCGTCGTACCAGCAACCAAGCACTGTTTTCCTTACACAAGACCAGTTTGATCCATCATTGGGTATGACTGCTAGAGATAGTGAGGAATTGGAGGTTGGTGGTGGCAGTAACATTTGA 957 0.4681 MYHPKSVPSSNLLGSNSLVHGGSTMDPGNGDNLSNNPNLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKEAGDMLSNLDGSPGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGTLPGAPGSGITGQVPEDTCLDPDNKTDPATPDPEKAAKERAPAKSLSNESFSSHHEPLTPDSGSPADSPKGERSTKRQKVSAEATFSKPDMVLPHQILESSMSSYQQPSTVFLTQDQFDPSLGMTARDSEELEVGGGSNI 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60445g00003 318 MobiDBLite consensus disorder prediction 299 318 - -
Stsc60445g00003 318 MobiDBLite consensus disorder prediction 101 127 - -
Stsc60445g00003 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Stsc60445g00003 318 FunFam Myb family transcription factor 41 99 - -
Stsc60445g00003 318 Coils Coil 132 152 - -
Stsc60445g00003 318 Gene3D - 41 100 - -
Stsc60445g00003 318 MobiDBLite consensus disorder prediction 101 119 - -
Stsc60445g00003 318 MobiDBLite consensus disorder prediction 8 38 - -
Stsc60445g00003 318 MobiDBLite consensus disorder prediction 198 220 - -
Stsc60445g00003 318 Pfam MYB-CC type transfactor, LHEQLE motif 129 175 IPR025756 -
Stsc60445g00003 318 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Stsc60445g00003 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 36 308 IPR044848 GO:0003700
Stsc60445g00003 318 MobiDBLite consensus disorder prediction 1 38 - -
Stsc60445g00003 318 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Stsc60445g00003 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Stsc60445g00003 318 MobiDBLite consensus disorder prediction 177 273 - -
Stsc60445g00003 318 MobiDBLite consensus disorder prediction 223 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60445g00003 Stsc-Chr60445 3479 9648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60445g00003 77 297 G2-like Transcription Factor Family AT2G01060 61.066 3.77e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60445g00003 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60445g00003 - - gmx:100786925 492.271