Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60444g00009 ATGAACACTGTGAGTCAGATATTCCAGAACATATTCTCAGACAACAGCAACATAATGCTTGCAGCTATAATATCTTTGCTTCTTGTCATCCTCTTTGTCCTTCTCCTCCATCTCTATGCTAAATGGTTCCTGGCTCAGGCTCAGGCTCAGGCTCAGGCAAATGCTCGCCGTCGTCGCCGCCGCCGCCGCAGAGCAGCCACTGTGACTGTCTCTGATGTTCTTGGCCCTGCAAGGTTCCACCACTTCCACAGCTTCAACATAGAAGATTCACCAATTTTCCCATCATCATCATCAAGTTCTACTCATCATAACACATCAAAAGGGTTAGATTCTTCTATCATTGCAGGGATTCCACTTTTCATTTATACTACTAATAATGAGAAGGTTCTAGAACATGATGATGAAGAAGAGCTTGAGTGTGTGATTTGTTTGAGTTCTTTTATAGATGGAGAGATGGGAAGGTGTTTGCCAAAATGTGGACATGGTTTTCATGTGGAATGCATTGATATGTGGCTGAGTTCTCATTCAAATTGTCCAATTTGCAGGGCTCCAATAATTCTTAGTAGTAGTGGGATTGTTGTTGAGAATAATGATAATTCCCAATTAGGTTCTGTTATTGATGATGGGACTGATCATGATCATGATCATGTTGATGATGGTGGTGCCTCTGCTTTTGTTGAGATTGTGGTTGATGATTTTGGTCAAAGTTCTGAGATTAGAGAGAATCATGAAAATGGAGGAAGGGTGAGTAGTAGTAGTGATTCTTCTGTCTCAGAATCAGAAACCTCAACATCTTTGGTAATTGTTGGTTGTTCTTTGAAGAGAATGTTGAGCAAAGTTTTTCCATCTTCTAATGTAAATGTACATGAATTGCAAACTTAG 882 0.4036 MNTVSQIFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQAQANARRRRRRRRRAATVTVSDVLGPARFHHFHSFNIEDSPIFPSSSSSSTHHNTSKGLDSSIIAGIPLFIYTTNNEKVLEHDDEEELECVICLSSFIDGEMGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIILSSSGIVVENNDNSQLGSVIDDGTDHDHDHVDDGGASAFVEIVVDDFGQSSEIRENHENGGRVSSSSDSSVSESETSTSLVIVGCSLKRMLSKVFPSSNVNVHELQT 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60444g00009 293 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Stsc60444g00009 293 Pfam Ring finger domain 139 182 IPR001841 -
Stsc60444g00009 293 CDD RING-H2_EL5-like 140 182 - -
Stsc60444g00009 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 186 IPR013083 -
Stsc60444g00009 293 FunFam RING-H2 finger protein ATL1 96 187 - -
Stsc60444g00009 293 SMART ring_2 140 181 IPR001841 -
Stsc60444g00009 293 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 185 IPR044675 -
Stsc60444g00009 293 SUPERFAMILY RING/U-box 125 188 - -
Stsc60444g00009 293 MobiDBLite consensus disorder prediction 237 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60444g00009 Stsc-Chr60444 102268 103149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60444g00009 10 192 Rapid Response to Elicitors AT3G16720 33.880 1.29e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60444g00009 - - adu:107473099 390.193