Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60444g00001 ATGGCAGTGGAGAATCCTCCTTTGATCATAAAGCTTAAAACTTCATCCAAACGAAAGCTTGACGTCGATCAGCGTGTTGAGGTGAGAAGCATGGAGAATGGCTTTCTGGGCTCATGGCACCCGGGGAAAGTTGTCTCTTCTGGGAGGCTGTATCGGCTTGTCGAATATGATAACATATTAGCTGATGATGTGGTGAATTACCTTGTGGATAAGGTGAATGTTCCGAAGGTTTTGGATGGTGAGAGCGATTCTTCAAATTGCAACATTCGTGGTTGGATTAGGCCAGTGCCTCCTAAGAGGGAATTTAAAATTAGGGAAGTTAAATTTGGCCTGTGTGTCGATGTGTACCATGAGGAAGCTTGGTGGGAAGGGGTTATATTTGATCACTATGATGGTATGGACGAGAGGAGTGTATTGTTTCCGGATTTGGGTGATGAGATGAAGATTGGAGTTCATCAAATGAGGATAACTTATGATTGGGATGAGGTTACTGAGAAGTGGCGGCGGAGAGGGAACTGGATTCTTCTTGAATTGATAGAGCAGTACCAGAGGACATCGTTTGTTTCAGTTTCAGCGAAGCAAGTTTGGTATGATGTAAGGACCAAAAGGGACTTTGCCAAGATTAGGGAATGGACTTGTAATGAGAAGAACTTATGGAAAGACATGGTAATGGAGATACTTGATGACTACTTAAGTCTTACATTAAGTGAAGTTTGCTCCTCCTTAGACCTTCCAAGGAGTTTATTGAATGAAACACCGGAGAAGGAGACTAATGTCGAATTCAATCAAGAAGTTGATATGGCCAACTCTTTGGATGTTGCAAACTCTACTGGCCAATCGAGTAGCAATTGTATCACAAGATTCACAGCCGCTCATTGTGATGGTACCCCTGATAATGCATTTAGTTCTGATGATGGGATTGCTGAACTCCCTATGGAAGAAGGTGGGTCATCTGATTCGTTGAACGCTAATCGAAACTGCACTGCCATCGAATCTGTCCCTCAGAGAGAAGTTTCGGTTCAGAAAGAACCACTTGTTCCTTTTCAAGAGTTCTCAACTCAGTTTCACAAGGAAACACCCTGCCATGTTGCTACAGAAGTAATTTCTTATGGAAGCTGCTTAGAAAAACGTAGACAGCGTCGCTCCTCAATTATTTGGGAACCTCTCCGATTTTCTGAAGTTGAGTCATGTCCTGATGCTGTTGAAGAATATGCAAAATCTGCTAAGAAGGCTTGTCCGGAAAAAGCACGAAAACATCTTGCTTATCTTGGATGGGAAATCGAGTGGACAAGGCATAAAGACAAATTCTACAGGTACAGGTATAGGTCTCCTGATAAACAGGGTCTTCACTACTCTCTCAGTTATGTTTGTAAAGATGTTGCACGGAGCTCGGACAGGAACCCTTTGCCGTCCCCAAATGATCAGAGTATGATGCAACCTACACCTGACACTCAACTTGCACCTATGGTAATTGATCAATCAGAAAAAAATGAGGATCTATACATTTTGCCTCCGGTTGTGTCGTCTCCTAAGGCTGAAAATGCAGATGAACCGGAGTTTTGTCCTGAAGCCGTTTTAGAATATAGCTTGAAGAGACTTGTACTGAGAGGGCATGCGTTGACAACATGTAAGTCCAAAGCAAAGAGGCATCTTTTGGCTGAAGGATGGAGCTATCAGTATATAGTTCCAAGTAACAAACAAAGGGGGTTTTTGTATACTCCTCCAGACAAGGGAAGAATTGTAAATACACTCCATGCAGCATGCCGTTATTGTATTGAACAAAATGTTTCTAAATGGAGCATGCTTGGAACGCAACCTTTGAATGCGAAGGGTAATGTTGAGCAGATTTGGAGTGCCAATTTATTGCAAAAAGCATCCCAATGGCTTCGAGAAGAACCTATGGTACATGCCACGAAAGGTGTAGCTTCAAGTGGATCAACCCATAATCGGAAGCGGAAACTCTTGGAAAACACAAAGCCCAGCTTATCTAAGCACCAAAGCAATGGAGTACCTCAACGGGTACTACGATCAAGTAAAAGGGTGCAAACGGCATCTGTCCCTTCTTTGTCACACCAGAAACCTCAGAATGTAGTGTCTTGGTTGATAGACAACAACATTCTGTTGCCAAGGTCTAAGGTTTCTTACAAGCCAAAAGGCAGGCACAGTTCAGCTGAAGGGAGAATAACCAATGATGGAATCAAGTGTAACTGCTGTCTTAAAGTATATAGTCTTTCTGGCTTTGAAAGCCATGCTAGTGGCTGTAGTACCCGCAGACCTGCTGCGAATATCATTCTAGAGGATGGTAGATCACTATTAGATTGCATGATAAAAACAATGGATGATCATATGAAAAGAGAAGCTATGGAAAAACCAACGAAATCTTTTCGCCAAGGCGAGAATGACAATGTTTGTTCTGTTTGCCACTATGGCGGCGATCTAATTTTATGCGATCAATGCCCATCTTCATTTCATGGGATATGCTTAGGTCTGGAGGACATCCCTGAAGGTGAATGGTTTTGCCCATCGTGTCGATGTGCAGTTTGTGGCGAAAGTAAAATTGAAGAGGAGGAGGAAGATTTCCTTGTTTGTGCTCAGTGTGAACATAAATATCATGTTAGGTGCCTCGAAGATAAAGATGCAACTAACTCGAGAAGATATAATAAGAACTGGTTCTGTGGAGGGGACTGTGAAAAGATATATGTAGGTCTCCATAAGCTACTAGGAGAGCCAGTTTCAGTGGGCAATAACAATAATCTAACTTGGACACTGGTGAAATATATAAACTCTGAGAGTAGAGATCAGTGTGCTTTTGAAGGTTACTTACTGCCAGAAAGTTACAGCAAACTCAACGTTGCACTCTCGGTGATGCATGAATGTTTTGAGCCTGTAAAGAATCCTTGGTCTAGAAGAGATCTCATGGAAGAGGTTTTATTCAGCAGAAGGTCAACGCTTAATCGACTGAATTTCCATGGTTTCTATACCGTACTTCTGGAGAGAAATGAAGAACTAATAAGTGCAGCAACTATTAGGGTCTATGGAAAGAAGGTAGCAGAAGTGCCTCTTGTTGGTACCAGATTACAGTATCGCCGACATGGAATGTGCCGCATTTTGATGAATGAACTTGAAAAGAGGCTTATGCAGCTGGGAGTGGAGAGGCTCATTTTGCCTGCTGTTCCTAGTGTTGTAGAAACATGGACCGGTTCTTTTGGCTTTGCAAGGATGACAGAGTTTGAGAGATCACAATTCTTGGACAACACCTTTTTAGATTTTCAGGATACCATAATGTGCCAGAAGCCGTTGACGAAGAATCCGTCTCCGGATTCGGTTTTGTTAATAGAGCCCCAACAAACTACGCAGGATGTTTTGCCTGGAACTAAGTTAAATTTTGATGCTGGTTCGGTATCGGAAGTATTACACCAAGCAGAAGAAACTGACAAAGGAGAGATACAGAATTCACAAATGCAAGATACTCTTGCTAGGAGCAATGGTGTCATTGAGCAATTCACAGTGGTGAATAAACCAAGTCCTGAGGATCATCAGTTCCATAGCTCCATTGTAACACAAGCTGACAGTAACAATGACTCATCATATAAGTGCTACTACAAAAGGAGGAGATATTCAAACTCATAG 3630 0.4234 MAVENPPLIIKLKTSSKRKLDVDQRVEVRSMENGFLGSWHPGKVVSSGRLYRLVEYDNILADDVVNYLVDKVNVPKVLDGESDSSNCNIRGWIRPVPPKREFKIREVKFGLCVDVYHEEAWWEGVIFDHYDGMDERSVLFPDLGDEMKIGVHQMRITYDWDEVTEKWRRRGNWILLELIEQYQRTSFVSVSAKQVWYDVRTKRDFAKIREWTCNEKNLWKDMVMEILDDYLSLTLSEVCSSLDLPRSLLNETPEKETNVEFNQEVDMANSLDVANSTGQSSSNCITRFTAAHCDGTPDNAFSSDDGIAELPMEEGGSSDSLNANRNCTAIESVPQREVSVQKEPLVPFQEFSTQFHKETPCHVATEVISYGSCLEKRRQRRSSIIWEPLRFSEVESCPDAVEEYAKSAKKACPEKARKHLAYLGWEIEWTRHKDKFYRYRYRSPDKQGLHYSLSYVCKDVARSSDRNPLPSPNDQSMMQPTPDTQLAPMVIDQSEKNEDLYILPPVVSSPKAENADEPEFCPEAVLEYSLKRLVLRGHALTTCKSKAKRHLLAEGWSYQYIVPSNKQRGFLYTPPDKGRIVNTLHAACRYCIEQNVSKWSMLGTQPLNAKGNVEQIWSANLLQKASQWLREEPMVHATKGVASSGSTHNRKRKLLENTKPSLSKHQSNGVPQRVLRSSKRVQTASVPSLSHQKPQNVVSWLIDNNILLPRSKVSYKPKGRHSSAEGRITNDGIKCNCCLKVYSLSGFESHASGCSTRRPAANIILEDGRSLLDCMIKTMDDHMKREAMEKPTKSFRQGENDNVCSVCHYGGDLILCDQCPSSFHGICLGLEDIPEGEWFCPSCRCAVCGESKIEEEEEDFLVCAQCEHKYHVRCLEDKDATNSRRYNKNWFCGGDCEKIYVGLHKLLGEPVSVGNNNNLTWTLVKYINSESRDQCAFEGYLLPESYSKLNVALSVMHECFEPVKNPWSRRDLMEEVLFSRRSTLNRLNFHGFYTVLLERNEELISAATIRVYGKKVAEVPLVGTRLQYRRHGMCRILMNELEKRLMQLGVERLILPAVPSVVETWTGSFGFARMTEFERSQFLDNTFLDFQDTIMCQKPLTKNPSPDSVLLIEPQQTTQDVLPGTKLNFDAGSVSEVLHQAEETDKGEIQNSQMQDTLARSNGVIEQFTVVNKPSPEDHQFHSSIVTQADSNNDSSYKCYYKRRRYSNS 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60444g00001 1209 CDD Tudor_Agenet_AtDUF_rpt1_3 25 98 - -
Stsc60444g00001 1209 Pfam PHD-finger 804 845 IPR019787 -
Stsc60444g00001 1209 CDD NAT_SF 995 1055 - -
Stsc60444g00001 1209 SUPERFAMILY FYVE/PHD zinc finger 778 844 IPR011011 -
Stsc60444g00001 1209 SMART ring_2 804 843 IPR001841 -
Stsc60444g00001 1209 SMART ring_2 845 899 IPR001841 -
Stsc60444g00001 1209 MobiDBLite consensus disorder prediction 660 689 - -
Stsc60444g00001 1209 Gene3D - 946 1103 - -
Stsc60444g00001 1209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 794 845 IPR013083 -
Stsc60444g00001 1209 SMART PHD_3 803 844 IPR001965 -
Stsc60444g00001 1209 SMART PHD_3 845 897 IPR001965 -
Stsc60444g00001 1209 SUPERFAMILY FYVE/PHD zinc finger 845 892 IPR011011 -
Stsc60444g00001 1209 ProSiteProfiles Zinc finger PHD-type profile. 801 846 IPR019787 -
Stsc60444g00001 1209 Pfam Agenet domain 24 98 IPR008395 -
Stsc60444g00001 1209 PANTHER PHD FINGER PROTEIN 12 541 1167 IPR042163 GO:0003714|GO:0045892
Stsc60444g00001 1209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 846 899 IPR013083 -
Stsc60444g00001 1209 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 955 1089 IPR000182 GO:0016747
Stsc60444g00001 1209 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 953 1083 IPR016181 -
Stsc60444g00001 1209 MobiDBLite consensus disorder prediction 656 689 - -
Stsc60444g00001 1209 Pfam Tify domain binding domain 726 777 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60444g00001 Stsc-Chr60444 9949 15491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60444g00001 29 457 PHD Transcription Factor Family AT5G58610 34.703 4.24e-67 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc60444g00001 Agenet 9.5e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60444g00001 - - aip:107644722 1816.59