Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60442g00037 ATGGATTCAGATCAGGGGAAGCTCTTCATCGGAGGGATTTCTTGGGACACCAACGAGGACAAGTTGAAGGATCATTTCTCCAACTATGGTGACGTCACCAATGCCTCCGTCATGCGTGACAAGAACACCGGCAAACCCAGAGGCTTCGCCTTCGTCGAATTTTCCGATCCCTCCGTTCTCGATAGGGTCCTCCAAGACAAGCACGTCATCGATGGCAGAACGGTTGATGCTAAGAGGGCCTTATCAAGAGAGGATCAACAAATCTCCGTCACTTCCAGAGGTGGAAATTCCCATTCTGGTTGGAACTCCGGTGGAAATGGTGGAAATATGAGGACGAAAAAGATATTTGTTGGAGGGTTACCACCCACATTGACTGAGGAGAAATTTCGTCAGTACTTTGAGTCATATGGTCATGTAACTGATGTAGTAGTTATGTTCGACCAGAATACTGGACGACCACGTGGATTTGGTTTCATTTCTTTTGACACTGAAGAGGCAGTTGATAGGGTTTTGCACAAGACATTCCATGATTTATACGGTAAGCAAGTTGAAGTGAAGCGTGCACTTCCTAAAGATGCCAATCCTGGTGCAAGTGGCCGCGGTGGAGGTAGTGGCGCCGGAGGGTATCAAGGGTATGGGGCATCTGGTGGCAACCAGAATGCTTATGATGGTCGTATGGATTCTAGTAGGTATATGCAACCTCAAAGCACCGCAGGTGGATTTCCACCTTATGGTTCTGCTGGCTATAGTGCGCCTGGATATGGTTACGGTCCAGCTAATAATGGTATGGGCTATGGTGCATATGGAAGTTATGGTGGTGCTGCTGCTAGTTATGGAGGAGCAGCTGGGGCAGCATATGGGAATCCAAATGTTGCTAATGCTGCTTATGCTGCTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCAGCTCAGGCTGCTTCTGGTTATGGGTCTATGGGCTATGGGAACACTGCTGCATGGGGTGCTCCAAGTGGCGGTGCTGGATCTGGCGGTGCTGGCCCTGGTTCAGCAACTGCAGGTCAATCCCCTAGTGCCGCTGCTGGATATGGGAATCAAGGATATGGATATGGTGGGTACGGTGGGTATAGTGGAAGTGATGGTTCTTATGGGAATCCAGGTGGATACGGTGCTGTTGGAGGGCGTACTGGGAGTACCCCGAACAGTAATGCCAGTGGTGCTGGTGGGAGTGAACTACAAGGTAGTGGTGGCAGTGGCAGCTATATGGGTGGTGGCTATGGCGATGCTAATGGAAATTCAGGTTATGGAAATGCTGGTTGGAGATCTGAACAAGCTCAAGGTTCTGGAAACTATGGGAATTCTCAGGGGACCCATGGTGGGCAAGTTGGTTATGGTGCGGGATATGGCGGTGCTCAGTCTTGA 1401 0.5039 MDSDQGKLFIGGISWDTNEDKLKDHFSNYGDVTNASVMRDKNTGKPRGFAFVEFSDPSVLDRVLQDKHVIDGRTVDAKRALSREDQQISVTSRGGNSHSGWNSGGNGGNMRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMFDQNTGRPRGFGFISFDTEEAVDRVLHKTFHDLYGKQVEVKRALPKDANPGASGRGGGSGAGGYQGYGASGGNQNAYDGRMDSSRYMQPQSTAGGFPPYGSAGYSAPGYGYGPANNGMGYGAYGSYGGAAASYGGAAGAAYGNPNVANAAYAAGPPGGPRSSWPAQAASGYGSMGYGNTAAWGAPSGGAGSGGAGPGSATAGQSPSAAAGYGNQGYGYGGYGGYSGSDGSYGNPGGYGAVGGRTGSTPNSNASGAGGSELQGSGGSGSYMGGGYGDANGNSGYGNAGWRSEQAQGSGNYGNSQGTHGGQVGYGAGYGGAQS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60442g00037 466 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Stsc60442g00037 466 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Stsc60442g00037 466 MobiDBLite consensus disorder prediction 218 237 - -
Stsc60442g00037 466 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 464 - -
Stsc60442g00037 466 MobiDBLite consensus disorder prediction 332 351 - -
Stsc60442g00037 466 MobiDBLite consensus disorder prediction 84 109 - -
Stsc60442g00037 466 MobiDBLite consensus disorder prediction 81 109 - -
Stsc60442g00037 466 MobiDBLite consensus disorder prediction 388 409 - -
Stsc60442g00037 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Stsc60442g00037 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Stsc60442g00037 466 FunFam heterogeneous nuclear ribonucleoprotein 1 108 225 - -
Stsc60442g00037 466 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Stsc60442g00037 466 Gene3D - 107 228 IPR012677 -
Stsc60442g00037 466 Gene3D - 4 88 IPR012677 -
Stsc60442g00037 466 MobiDBLite consensus disorder prediction 425 466 - -
Stsc60442g00037 466 CDD RRM2_Hrp1p 114 191 - -
Stsc60442g00037 466 SMART rrm1_1 7 78 IPR000504 GO:0003723
Stsc60442g00037 466 SMART rrm1_1 114 186 IPR000504 GO:0003723
Stsc60442g00037 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Stsc60442g00037 466 MobiDBLite consensus disorder prediction 387 409 - -
Stsc60442g00037 466 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Stsc60442g00037 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Stsc60442g00037 466 MobiDBLite consensus disorder prediction 428 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60442g00037 Stsc-Chr60442 202316 205812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60442g00037 8 176 Eukaryotic Initiation Factors Gene Family AT2G36660 28.571 3.05e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60442g00037 K14411 - gmx:100811267 511.146