Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60442g00036 ATGGATTCAGATCAGGGGAAGCTCTTCATCGGAGGCATTTCATGGGACACCGATGAGGACAAGTTGAGGGACCATTTCTCCAACTATGGTGACGTCACCAACTCCTCCGTCATGAGGGACAAGAACACCGGCAAGCCCAGAGGCTTCGGCTTCGTCGAATTTGCTGATCCCTCCGTCCTCGATAGGGTCCTCCAAGACAAGCACGTCATCGATGGCAGAACGGTTGATGCCAAGAGGGCCTTATCAAGAGAGGATCAACAAATTTCTGTCACTTCCAGAGGTGGAAATTCCAATTCTGGTTGGAATTCTGGTGGAAATGGTGGAAACATGAGGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACACTGACTGAAGAAAAATTTCGTCAATACTTTGAATCATATGGTCATGTAACTGATGTAGTAGTTATGTTCGACCAGAATACTGGACGACCACGTGGATTTGGTTTTATTTCATTTGACAGTGAGGAGGCTGTTGATAGGGTTTTGCACAAGACATTTCATGATTTATATGGTAAACAAGTAGAGGTGAAGCGGGCACTTCCTAAGGATGCCAATCCTGGTGCAAGTGGCCGCAGTGGTGGTGGTGGCGGCGCAGGAGGGTATCAAGGTTATGGATCATCTGGTGGCAACCAGAATGCTTATGATGGCCGTATGGATTCCAGTAGGTATATTCAGCCTCAAAGTGCTGCTGGTGGATTTCCACCTTATGGTTCTGCTGGCTATAGTGCGCCTGGATATGGTTACGGTCCAGCTAATAATGGTATGGGCTATGGTGCATATGGAAGTTATGGTGGTGCTGCTGCTAGTTATGGAGGAGCAGCTGGGGCAGCATATGGGAATCCAAATGTTGCTAATGCTGCTTATGCTGCTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCAGCTCAGGCTGCTTCTGGTTATGGGTCTATGGGCTATGGGAACACTGCTGCATGGGGTGCTCCAAGTGGCGGTGCTGGATCTGGCGGTGCTGGCCCTGGTTCAGCAACTGCAGGTCAATCCCCTAGTGCCGCTGCTGGATATGGGAATCAAGGATATGGATATGGTGGGTACGGTGGGTATAGTGGAAGTGATGGTTCTTATGGGAATCCAGGTGGATACGGTGCTGTTGGAGGGCGTACTGGGAGTACCCCGAACAGTAATGCCAGTGGTGCTGGTGGGAGTGAACTACAAGGTAGTGGTGGCAGTGGCAGCTATATGGGTGGTGGCTATGGCGATGCTAATGGAAATTCAGGTTATGGAAATGCTGGTTGGAGATCTGAACAAGCTCAAGGTTCTGGAAACTATGGGAATTCTCAGGGGACCCATGGTGGGCAAGTTGGTTATGGTGCGGGATATGGCGGTGCTCAGTCTTGA 1404 0.5021 MDSDQGKLFIGGISWDTDEDKLRDHFSNYGDVTNSSVMRDKNTGKPRGFGFVEFADPSVLDRVLQDKHVIDGRTVDAKRALSREDQQISVTSRGGNSNSGWNSGGNGGNMRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMFDQNTGRPRGFGFISFDSEEAVDRVLHKTFHDLYGKQVEVKRALPKDANPGASGRSGGGGGAGGYQGYGSSGGNQNAYDGRMDSSRYIQPQSAAGGFPPYGSAGYSAPGYGYGPANNGMGYGAYGSYGGAAASYGGAAGAAYGNPNVANAAYAAGPPGGPRSSWPAQAASGYGSMGYGNTAAWGAPSGGAGSGGAGPGSATAGQSPSAAAGYGNQGYGYGGYGGYSGSDGSYGNPGGYGAVGGRTGSTPNSNASGAGGSELQGSGGSGSYMGGGYGDANGNSGYGNAGWRSEQAQGSGNYGNSQGTHGGQVGYGAGYGGAQS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60442g00036 467 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Stsc60442g00036 467 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 465 - -
Stsc60442g00036 467 MobiDBLite consensus disorder prediction 189 227 - -
Stsc60442g00036 467 MobiDBLite consensus disorder prediction 388 410 - -
Stsc60442g00036 467 MobiDBLite consensus disorder prediction 429 454 - -
Stsc60442g00036 467 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Stsc60442g00036 467 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Stsc60442g00036 467 Gene3D - 4 88 IPR012677 -
Stsc60442g00036 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Stsc60442g00036 467 MobiDBLite consensus disorder prediction 213 227 - -
Stsc60442g00036 467 FunFam heterogeneous nuclear ribonucleoprotein 1 108 226 - -
Stsc60442g00036 467 MobiDBLite consensus disorder prediction 333 352 - -
Stsc60442g00036 467 MobiDBLite consensus disorder prediction 84 108 - -
Stsc60442g00036 467 MobiDBLite consensus disorder prediction 389 410 - -
Stsc60442g00036 467 Gene3D - 109 228 IPR012677 -
Stsc60442g00036 467 SUPERFAMILY RNA-binding domain, RBD 112 220 IPR035979 GO:0003676
Stsc60442g00036 467 CDD RRM2_Hrp1p 114 191 - -
Stsc60442g00036 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Stsc60442g00036 467 SMART rrm1_1 114 186 IPR000504 GO:0003723
Stsc60442g00036 467 SMART rrm1_1 7 78 IPR000504 GO:0003723
Stsc60442g00036 467 MobiDBLite consensus disorder prediction 81 108 - -
Stsc60442g00036 467 MobiDBLite consensus disorder prediction 426 467 - -
Stsc60442g00036 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Stsc60442g00036 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60442g00036 Stsc-Chr60442 202316 210271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60442g00036 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 22.660 1.19e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60442g00036 K14411 - gmx:100811267 518.85