Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60442g00017 ATGATGATGAAGCCAAGAATAATAAATATGCAAGAAGGAAGGTCATCAGAGACATATAATAGTGAAGATGAAGAAGACGAAGAACAAGAAGAGGAAGAAGAAGATAAGAAATCATCATATGATTGCACATTTTGTAGGAGAGGATTCACCAATGCTCAAGCATTAGGAGGTCACATGAATATTCATAGAAAACACAAACCCAATAATAATAATAATAATCCCAAAAAAACAATTATCAATTATCCTCCTTCTTCATCTTCATCACCACCAAACAAATTCTTAGAATCCATGGCCGCCTCTTCTTCTACTAATAGTTCATCAACAACAACAACTTGTTATTACCCTTTCTTCGAGTCGAATCATCTTCGTCAAAGCCCTCCTCCTCCTGCATATGAGTTTATGAACACAACAAGGTACCATCATCATCATGAGTCCCAAGAGCTTCTTGGCCCCAATTTGAGTCTTCAAATAGGTAGTCCAAGTACTTATCATGCTGATCAAGTTATTAGAACAAGAGGGATTAATAATCATCAGAATAAAGATTCTCAAGTTCTTGACTTAGAGCTCAGGCTATAG 576 0.3611 MMMKPRIINMQEGRSSETYNSEDEEDEEQEEEEEDKKSSYDCTFCRRGFTNAQALGGHMNIHRKHKPNNNNNNPKKTIINYPPSSSSSPPNKFLESMAASSSTNSSSTTTTCYYPFFESNHLRQSPPPPAYEFMNTTRYHHHHESQELLGPNLSLQIGSPSTYHADQVIRTRGINNHQNKDSQVLDLELRL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60442g00017 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Stsc60442g00017 191 MobiDBLite consensus disorder prediction 19 35 - -
Stsc60442g00017 191 MobiDBLite consensus disorder prediction 71 107 - -
Stsc60442g00017 191 PANTHER OS07G0101800 PROTEIN 20 191 - -
Stsc60442g00017 191 SUPERFAMILY beta-beta-alpha zinc fingers 37 68 IPR036236 -
Stsc60442g00017 191 MobiDBLite consensus disorder prediction 58 107 - -
Stsc60442g00017 191 MobiDBLite consensus disorder prediction 1 39 - -
Stsc60442g00017 191 Gene3D Classic Zinc Finger 12 100 - -
Stsc60442g00017 191 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60442g00017 Stsc-Chr60442 118483 119058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60442g00017 40 68 C2H2 Transcription Factor Family AT5G43540 79.310 7.74e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60442g00017 - - lang:109360170 108.227