Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60442g00016 ATGTTAAAAGCAGTGGCATCTTGGTTCTTGTTGATTTCCTCACTCCTCTTATGGGTAAGTGTATCTGCATCAACAACAGATAATGGATTCCCAAGATGTAACTGTGATGATGAATCAAGCTTGTGGACTATTGAGAGCATTCTTGAGTGCCAGAGAGTTGGGGATTTCTTGATTGCTGTGGCATACTTTTCAATCCCCATTGAGCTTCTTTACTTCATAAGTTGCACAAATGTCCCTTTCAAATGGGTCCTTATACAGTTCATTGCCTTCATTGTGCTATGTGGATTGACCCATTTGTTGAATGGGTGGACATATGGCCCTCACACTTTTCAGCTCATGGTGGCACTCACCGTCTTCAAGATTCTCACTGCATTGGTGTCGTGCGCCACCGCCATCACTCTTGTCACGCTGATCCCTATGCTTCTTAAGGTCAAGGTCAGGGAGTTCATGCTGAAGAAGAAGACATGGGATCTTGGCCGGGAGGTCGGCCTTATATTGAGGCAAAAGGAGGCTGCAAGCCATGTGAGGATGCTCACTCAGGAGATTCGCAAGTCGCTCGATAGGCATACGATTCTTTATACCACTTTGGTGGAGCTGTCTAAGACACTGGGATTGCAGACTTGTGCTGTGTGGATGCCTAATGTGGAGAAGACAGAGATGAACCTTACTCATGAATTGAATAGGAGGAATTTTGATTTTTCTATACCGATTACTGATCCGGACGTTGTAAAGATTAAAGGAAGTGATGGAGTGAATATACTTAGCCCTGAATCCGCACTTGCTGGGGCAAGTAGTGGTGTAAATGGAGAGATTGGACCGGTTGCTGCAATTCGTATGCCAATGCTACGAGTTTGTAATTTCAAAGGAGGAACACCTGAGCTAACGCAGGCATGTTATGCGATATTGGTATTGATCCTTCCTAGTGGAGAGACCAGATCTTGGAGCAATCAAGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTTGCGGTGGCCTTATCTCATGCTGCAATTCTGGAAGAATCTCAGCTCATGAGAGAGAAGTTGGAGGAACAAAATCGTGCTTTGCAGCAGGCGAAAAGGGATGCTATGATGGCANNNNNNNNNNGCCAGGCAAGAAGCTCATTTCAGAAAGTCATGAGTGATGGGATGAGGAGGCCTATGCATTCGATTTTGGGATTGCTTTCAATGGTGCAAGACAATAATTTGAAGAGTGAACAGAAGCTTATTGTGGATGCAATGCTAAGGACCAGCAATGTTGTATCAAACTTGATAAACGATGCCATGGACAGTTCGGCGAAGGATGATGGAAGATTCTCGTTGGAGATAAGGTCTTTCAGGTTACATTCGTTGATAAAAGAAGCGGCTTGCCTTTCCAAGTGCATGTGTGTCTATAGAGGATTTGGTTTCATGGTCGAGGTCGAGAAGTCTTTGCCGGAGAATGTAATGGGGGATGAGAGGAGGGTTTTTCAGGTAATTTTGCACATGGTTGGGAACCTTCTGGATCATAGCCATGGGGAAGGGACCCTTGTACTTCGGGTTTTCGCCGACACCGGAAGTCAGGGAAGGACTGACAAGGGGTGGACAAGCTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGGGATTCAGAAGTTGGGAGCTCGTTTTCTTCAGGATTCGGAGGAGTTAGGAAGTTTTCTAGTGATAGGGTTGAGGGCCGATTGAGCTTCAGCATTTGCAAAAGGATAGTTCAGCTGATGCAAGGCAACATATGGTTGGTTCCGAATTCTCATGGTTATCCTCAAAGCATGGCCCTCGTTCTTCGGTTTCAATTACGGCCATCAATCAGCATAGCCATCTCAGAACCTGGCGAGTTTTCGGAGCGATCTGGTTCAAATTCTCTATTGAGAGGTCTGCAAGTTCTGGTGGCCGACAACGATGATGTAAATAGGGCAGTGACCCAAAAGCTGCTTCAGAAATTAGGCTGCGTTGTAGCCACCGTATCTTCCGGATTTGAATGCCTCACTGCCATCGGACCTGCCGGAACTTCTTTCCAAATCATTCTTTTGGATCTTCACATGCCTGACATAGATGGCTTCGAAGTCACCACGAGGATTCGGAAGTTCAGGAGCCGAAACTGGCCGATGATCGTAGCGTTGACCGTGAGTATGGAAGATGAATTGTGGGAGAAGTGCATGCAGATTGGTATCAATGGAGTTATCCAAAAACCAGTTTTGTTGCAAGGAATTGCAAGTGAGCTCAGAAGACTCATAATTCAGGGAAATAATGTCCTGTGA 2307 0.4547 MLKAVASWFLLISSLLLWVSVSASTTDNGFPRCNCDDESSLWTIESILECQRVGDFLIAVAYFSIPIELLYFISCTNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATAITLVTLIPMLLKVKVREFMLKKKTWDLGREVGLILRQKEAASHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQTCAVWMPNVEKTEMNLTHELNRRNFDFSIPITDPDVVKIKGSDGVNILSPESALAGASSGVNGEIGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPSGETRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKRDAMMAXXXXQARSSFQKVMSDGMRRPMHSILGLLSMVQDNNLKSEQKLIVDAMLRTSNVVSNLINDAMDSSAKDDGRFSLEIRSFRLHSLIKEAACLSKCMCVYRGFGFMVEVEKSLPENVMGDERRVFQVILHMVGNLLDHSHGEGTLVLRVFADTGSQGRTDKGWTSWRPSSSSGDVNIRFEIGINSRDSEVGSSFSSGFGGVRKFSSDRVEGRLSFSICKRIVQLMQGNIWLVPNSHGYPQSMALVLRFQLRPSISIAISEPGEFSERSGSNSLLRGLQVLVADNDDVNRAVTQKLLQKLGCVVATVSSGFECLTAIGPAGTSFQIILLDLHMPDIDGFEVTTRIRKFRSRNWPMIVALTVSMEDELWEKCMQIGINGVIQKPVLLQGIASELRRLIIQGNNVL 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60442g00016 768 SMART gaf_1 187 343 IPR003018 GO:0005515
Stsc60442g00016 768 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 30 763 - -
Stsc60442g00016 768 SMART REC_2 642 761 IPR001789 GO:0000160
Stsc60442g00016 768 Gene3D - 438 614 IPR036890 -
Stsc60442g00016 768 FunFam Ethylene receptor 640 765 - -
Stsc60442g00016 768 CDD HATPase_ETR2_ERS2-EIN4-like 478 611 - -
Stsc60442g00016 768 CDD HisKA 371 432 IPR003661 GO:0000155|GO:0007165
Stsc60442g00016 768 Pfam Response regulator receiver domain 644 751 IPR001789 GO:0000160
Stsc60442g00016 768 FunFam Ethylene receptor 4 336 433 - -
Stsc60442g00016 768 ProSiteProfiles Response regulatory domain profile. 643 761 IPR001789 GO:0000160
Stsc60442g00016 768 PIRSF Ethylen_sen_hybr_HK 1 768 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Stsc60442g00016 768 SUPERFAMILY CheY-like 640 760 IPR011006 -
Stsc60442g00016 768 SUPERFAMILY GAF domain-like 190 336 - -
Stsc60442g00016 768 Gene3D - 627 761 - -
Stsc60442g00016 768 ProSiteProfiles Histidine kinase domain profile. 379 617 IPR005467 -
Stsc60442g00016 768 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 600 IPR003594 -
Stsc60442g00016 768 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 438 IPR036097 GO:0000155|GO:0007165
Stsc60442g00016 768 CDD REC_ETR-like 642 757 - -
Stsc60442g00016 768 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Stsc60442g00016 768 Gene3D - 173 344 IPR029016 -
Stsc60442g00016 768 Coils Coil 339 366 - -
Stsc60442g00016 768 Gene3D - 350 437 - -
Stsc60442g00016 768 Pfam GAF domain 187 333 IPR003018 GO:0005515
Stsc60442g00016 768 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 598 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60442g00016 Stsc-Chr60442 100764 104770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60442g00016 27 759 Miscellaneous Gene Families AT3G04580 57.718 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc60442g00016 GAF 1.6e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60442g00016 K14509 - gmx:100787425 1254.97