Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60442g00014 | ATGGAGATAGCGGGTGGTGCTGACGTGGCAGAGAGCGTGGCGCAGTTCGCCCGGAGGCGACAGCGCGGGGTTTGTGTGCTCAGCGGGAGTGGATCCGTCGCTAATGTTACCATCAGACAGCCCACGGCGCCAGGCGCCGTGGTACTTCATGGAAGGTTTGAGATCTTGTCCTTAACAGGAGCGTTTTTGCCTGGTCCTGCCCCTCCTGGGTCCACGGGGCTAACCGTGTACCTTGCTGGTGGGCAGGGCCAGGTAATTGGAGGGAGTGTTGTTGGGTCACTTGTAGCTGTTGGGCCTGTTATGGTCATTGCTGCCACTTTTGCTAATGCAACCTATGAGAGGCTCCCTCTTGATGACGAAGATGAGGGGCCTAGTGGGGGCGGTGGTAGTAGTGGTGGTACCGGAGGAGGTGCAGGCGGTGGAGGATCTCCACCATCACATCCTCCTCCAGGAATTGGAGGTAGCGGAGGGCATTACCAATTACAGGCCGGTGGTGGCCTTCCGGATCCGACATCTCTTCCTTTGTATAACATGCCACCTAATTTGATGCCTAATGGAGGGCAGGTAGGGCATGAGGCATATCCTTGGCCTCATGGACGACCACCTTACTAA | 612 | 0.5719 | MEIAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTIRQPTAPGAVVLHGRFEILSLTGAFLPGPAPPGSTGLTVYLAGGQGQVIGGSVVGSLVAVGPVMVIAATFANATYERLPLDDEDEGPSGGGGSSGGTGGGAGGGGSPPSHPPPGIGGSGGHYQLQAGGGLPDPTSLPLYNMPPNLMPNGGQVGHEAYPWPHGRPPY | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60442g00014 | 203 | CDD | DUF296 | 2 | 107 | IPR005175 | - | |
| Stsc60442g00014 | 203 | FunFam | AT-hook motif nuclear-localized protein | 1 | 122 | - | - | |
| Stsc60442g00014 | 203 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 1 | 199 | IPR014476 | GO:0003680 | |
| Stsc60442g00014 | 203 | Gene3D | - | 1 | 122 | - | - | |
| Stsc60442g00014 | 203 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 1 | 108 | IPR005175 | - | |
| Stsc60442g00014 | 203 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 2 | 120 | - | - | |
| Stsc60442g00014 | 203 | PIRSF | ESCAROLA | 1 | 203 | IPR014476 | GO:0003680 | |
| Stsc60442g00014 | 203 | MobiDBLite | consensus disorder prediction | 115 | 203 | - | - | |
| Stsc60442g00014 | 203 | ProSiteProfiles | PPC domain profile profile. | 1 | 130 | IPR005175 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60442g00014 | Stsc-Chr60442 | 80526 | 81137 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60442g00014 | 1 | 203 | AT-hook Motif Nuclear Localized (AHL) Family | AT4G14465 | 62.319 | 1.29e-68 | 209 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60442g00014 | - | - | ahf:112778740 | 305.064 |