Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60442g00004 ATGGCATGCATGGATAGCTGGCATAACATAACCCTCTTTTCTGAATTTCGCAGTGCGAGCTCTGAAATTGGCTTTTCAGCAGGAGGTAGTGCTGGTGGTAGTAGTGATGTCTGCCCAAAGAAAACCAGAAAGAGGGGACATGCTAGTTCATGTTGCAAGGAAGGGACAAAGGCTGGCCGTGAAAAGTTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGTGCTGTGTTGGAACCTGGGAGACCTGCGAAAACTGATAAAATGGCCATACTTGATGATGCTATTAGAGTTTTGAAACAACTTAAAACTGAAGCTGAGGAACTCAAAGAAACGAATGCAAAATTGTTAGAAGAAATAAAATGTTCGAAGGCAGAGAAAAATGAACTCCGAGAAGAGAAACTTGTTCTGAAAGCAGATAAAGAAAGGATTGAGAGACAGTTGAAAGATTTGCCCGTTCAACCTGCAGGGTATATGCCTCCCAATCTAGCTCCTTTCCAAGCAGGGGTCAACAAAGTCGCTGTTTATCCGAACTATGGTTATATGCCAATGTGGCATTATCTTCCTCCATCTACCCGTGATACATCCCATGATCACGAGCTTAGGCCTCCTGCTGCATAA 624 0.4407 MACMDSWHNITLFSEFRSASSEIGFSAGGSAGGSSDVCPKKTRKRGHASSCCKEGTKAGREKLRRERLNERFCDLSAVLEPGRPAKTDKMAILDDAIRVLKQLKTEAEELKETNAKLLEEIKCSKAEKNELREEKLVLKADKERIERQLKDLPVQPAGYMPPNLAPFQAGVNKVAVYPNYGYMPMWHYLPPSTRDTSHDHELRPPAA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60442g00004 207 CDD bHLH_AtILR3_like 57 132 - -
Stsc60442g00004 207 Pfam Helix-loop-helix DNA-binding domain 56 104 IPR011598 GO:0046983
Stsc60442g00004 207 PANTHER BHLH TRANSCRIPTION FACTOR 30 207 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Stsc60442g00004 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 127 IPR036638 GO:0046983
Stsc60442g00004 207 Coils Coil 93 148 - -
Stsc60442g00004 207 SMART finulus 58 109 IPR011598 GO:0046983
Stsc60442g00004 207 MobiDBLite consensus disorder prediction 27 51 - -
Stsc60442g00004 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 103 IPR011598 GO:0046983
Stsc60442g00004 207 Gene3D - 60 140 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60442g00004 Stsc-Chr60442 16219 18248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60442g00004 29 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 63.298 8.08e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60442g00004 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60442g00004 - - gmx:100789655 275.404