Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60442g00001 ATGGATCTTGTTATAAGAAGACACATGATTTATGTGTCACTCTCATCACAATCAGAATCTATTCCACCAGCAACAAATCCAGGGACTAATTATTCAATCTTCCATCCTCATGGTCATTCATCTTCAGGAACAAGCTTCCCAATCATAGCAATTGCCATCATTGGAATAATGGCCACAGCATTCTTGCTAGTAAGCTACTACATCTTTGTCATCAAATGCTGCCTTAATTGGCACCGGATCGATATCCTGCGCCGCTTCTCGCCTTCTAGAAGGCGCCGGGATGATCCAGCTTTTGCAGTATATGCTAATGGAATACCGGCAGAGCCCCGGGGGCTGGACGAGGCGGTTATAAGGCTAATTCCGGTAATTGGTTACAAGAATTCGCAGCTTAGCAGCTGCGAATGCGCGGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTGAGGATTATTCCAAATTGCAGCCATGTTTTTCACATTGATTGCATTGATGTTTGGCTTCAGAACAATGCAAATTGCCCTCTTTGTAGGACAAGCATTTCTTTAACAAGTAGGTTCGACATTGATCAGCTTCTCAACAACAGAATAAGGCCTCTCACAACTCCTCCTTCTTCTTCCTCGTCGTCGCCGCCGCAACAAGTGATTGAAGATGAAGATTTTGTTGTTATTGAATTGGCTAATGTTAATGATGATGAGAATGTTCATGATAATAATGGTTTGGAATCAGCATTAGCAAGTAGAGCATGTTCTATTGTTAGTCCTTCACCAAGGAAGAAAGGAATGAAGCTGAAGAAGGTGACAAGCATGGGGGATGAGTGCATTGACATAAGAGGCAATAAAGATGAGAATTTCTCAGTGCAACCAATAAGAAGGTCTTTCTCTATGGACTCTTCAGGAGATAGGAAATTCTATTTGGCAGTTCAAGAAGCTTTGCAGCAGCAGCAGCAGAACAATAACAACTCCATTGAAGGGTGCAGTGGTGGAAGTGGAAGAGCTAAGAGATCATTCTTTTCATTTGGATATGGAAGTGGCAGATCCAGAAGTTCTGTGCTACCTGTTGTTTTGGACTCTTGA 1074 0.4246 MDLVIRRHMIYVSLSSQSESIPPATNPGTNYSIFHPHGHSSSGTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRRRDDPAFAVYANGIPAEPRGLDEAVIRLIPVIGYKNSQLSSCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFDIDQLLNNRIRPLTTPPSSSSSSPPQQVIEDEDFVVIELANVNDDENVHDNNGLESALASRACSIVSPSPRKKGMKLKKVTSMGDECIDIRGNKDENFSVQPIRRSFSMDSSGDRKFYLAVQEALQQQQQNNNNSIEGCSGGSGRAKRSFFSFGYGSGRSRSSVLPVVLDS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60442g00001 357 CDD RING-H2_EL5-like 134 177 - -
Stsc60442g00001 357 PANTHER RING-H2 FINGER PROTEIN ATL16 31 353 IPR044600 GO:0016567|GO:0016740
Stsc60442g00001 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 182 IPR013083 -
Stsc60442g00001 357 Pfam Ring finger domain 134 177 IPR001841 -
Stsc60442g00001 357 SMART ring_2 135 176 IPR001841 -
Stsc60442g00001 357 SUPERFAMILY RING/U-box 126 182 - -
Stsc60442g00001 357 FunFam E3 ubiquitin-protein ligase ATL6 102 183 - -
Stsc60442g00001 357 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60442g00001 Stsc-Chr60442 5810 7161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60442g00001 40 356 C3H Transcription Factor Family AT1G04360 50.992 3.06e-92 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60442g00001 - - gmx:100794749 399.438