Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60441g00034 ATGGGAAGATCACCATGCTGTGACAAAGTGGGTTTGAAGAAAGGACCATGGACACCAGAGGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCAGGGCTTGAAAGGTGTGGGAAGAGCTGCAGATTGAGATGGACGAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAGCTTCATGCACTCTTAGGAAACAGGTGGTCGGCTATAGCCACACACTTGCCAAAGAGAACAGATAACGAGATCAAGAACTATTGGAACACTCATCTCAAGAAACGCTTAACCAAAATGGGCATCGATCCTGTTACCCACAAGCCCAAGAACGATGCCCTAGTCCCCGGCAGCGGTGATGGCGGCCATTCCAACAAGGCCGCTGCCAACCTAAGCCACATGGCTCAGTGGGAGAGTGCTCGGCTTGAAGCTGAAGCAAGGTTGGTTAGGGAATCAAAATTACGTTCACAACACCAACAACATTTTCCATCCACCTCCTCCTCTTCCTCTTCAGCTCAAGTTATAATCAGATTAGTAAACGAGTCTTCGATATCCACGACCAATAAGGATTGGAATAACAACAATGCGGATTGGTTTTTGAGATCTAATAATGTCAGTAATGGTGGTGGAATAATGGGAAATGGTGAAGAACTCGAGTCACCAACATCAACGTTATCATTCTCGGAGAACAATGCATCAGATCCAGCAATAATTGGAGAAAATAGCAACAACAATGGTGGAGTGGTGCCTATGATTGAGTTTGTGGGAGCTAATTCAGGAATTATTAGGAGTATTAACGTGAAGGAAGAAGGTAGCGAAGATCATGATAATTCTTCATCAATGGGTCCCTTCAATAATAACCCTAGCTTGCATGAATTGGCAATGATGACAATGGAATCAACGTGGGGAAGTTCTTCTCATAATAATCATGAAGATGAGTCTCTTAGGACCAGTGGTAGTAACGGTGCACATGTTAATAATGTTGGTAATGATGATAATAATGCTGAAGAAGAAGAAGAAAAAGAAGAAGAAGAATTAGGGTTCACAAATCTTCTGCTGAATACTAGTAATAACAATGAAGTGAGTTTGTCATCTGAAGGTGGTGATGGTGGAGAGTCTCATCATCATAACAATAATAATGAAAATTGTGATTCATCATATGAAGATAAGAACTATTGGAACAGCATTCTTCATTTGGTGAATTCTTCACCTTCTCATTCACCAATCTTTTGA 1290 0.4171 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALVPGSGDGGHSNKAAANLSHMAQWESARLEAEARLVRESKLRSQHQQHFPSTSSSSSSAQVIIRLVNESSISTTNKDWNNNNADWFLRSNNVSNGGGIMGNGEELESPTSTLSFSENNASDPAIIGENSNNNGGVVPMIEFVGANSGIIRSINVKEEGSEDHDNSSSMGPFNNNPSLHELAMMTMESTWGSSSHNNHEDESLRTSGSNGAHVNNVGNDDNNAEEEEEKEEEELGFTNLLLNTSNNNEVSLSSEGGDGGESHHHNNNNENCDSSYEDKNYWNSILHLVNSSPSHSPIF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60441g00034 429 MobiDBLite consensus disorder prediction 319 365 - -
Stsc60441g00034 429 MobiDBLite consensus disorder prediction 377 402 - -
Stsc60441g00034 429 CDD SANT 69 112 IPR001005 -
Stsc60441g00034 429 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc60441g00034 429 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc60441g00034 429 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc60441g00034 429 CDD SANT 16 61 IPR001005 -
Stsc60441g00034 429 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc60441g00034 429 Gene3D - 69 116 - -
Stsc60441g00034 429 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 261 - -
Stsc60441g00034 429 MobiDBLite consensus disorder prediction 388 402 - -
Stsc60441g00034 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc60441g00034 429 MobiDBLite consensus disorder prediction 334 349 - -
Stsc60441g00034 429 MobiDBLite consensus disorder prediction 289 308 - -
Stsc60441g00034 429 FunFam MYB transcription factor 69 116 - -
Stsc60441g00034 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc60441g00034 429 Gene3D - 13 66 - -
Stsc60441g00034 429 SMART sant 13 63 IPR001005 -
Stsc60441g00034 429 SMART sant 66 114 IPR001005 -
Stsc60441g00034 429 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc60441g00034 429 FunFam MYB-related transcription factor 13 66 - -
Stsc60441g00034 429 Coils Coil 344 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60441g00034 Stsc-Chr60441 197180 200357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60441g00034 1 249 MYB Transcription Factor Family AT3G01140 68.800 1.59e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60441g00034 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60441g00034 K09422 - gmx:100101835 425.631