Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60441g00026 ATGGCAAGGAAGAGAAAGGTTGCTGAAGCAATTGAAGAAAACATTGAATCATGGCATGAAATGATCAAAGAAGCTGAATCATTAGGAGGCTCCACAAGAAGAACAAGAAAGAGGTTTGTTGGTGTGAGACAAAGGCCATCAGGAAGATGGGTAGCTGAGATCAAAGATACCATTCAGAAGATCAGAGTTTGGTTAGGAACTTTTGATACTGCTGAAGAAGCTGCTAGAGCCTATGATGAAGCAGCTTGCATCCTCAGAGGATCAAACACTCGAACTAACTTTGATCCCTGTTATCCTCATCCTTCTTCAACTCCTGCTCTTCCCCCGAAGATTGCGAAACTCCTCCTTCAGAGGCTTAAAGCAAAGAATGATAGCACCTCTTGCTTTTCTTCTTCTTCTTCATCCTTAAGTTCTTCTGATCTTAGTACTACTCATCAAGAAAATCATCAAGCTGATGTGTGTGGAGCAGAGTCGAAAGGCTTCTCGATTGATCAATTCGCTGATTTCCTTTATGATCATGAAGCTTGTAGCGCAAGCAACAACGAATTTAGTGATTATATTGAACAGATTGATTGCATTGCTAGTAGTTTTGAATCGTGTTTAGCTCAGAAAGATGCCGGTAGGGAGAAAGACACGGATGCAACACAAGTATCGAGCACTGACTCGAATTCAAGAGGGGAGAAGGAGGAAGAAAGCGAGGAAGAAGAAGGTTTGATTGTTGAGGATTTCAGGTTCCTGGATGACAATGTTGCAAGTTACTATTATTCTCCTTTTGAGATTGTTGAAGAGATGGAGGAGCCTATGGAGGCAGAGAACTATGGTGGTGATGATGATGAGCCTTCAATGATGAAAGCTATAATGAATAGAATGAAGTATGAGAGGAAGTTCTCAGCTTCTCTCTATGCCTTCAATGGGATATATGAGTGCTTGAAGTTGAAGCTTCATCAGTCAGGGAACATAAAGGGTAGAACAGGAATTTCAGATCAAATTAGCAAACTCAAGAAAGCTTGCAGCAATAACAAAAATGAGGTTAATAAGGAGGAAATGGAAAAGGAAAAGGAGAAGGAATCCATTGATTCTTCCTTACCATCAAACATTGATGGAGATTTGTTGTTTTGGAATTCCCTTGATCTCCCTAACATTTTCTAA 1149 0.4038 MARKRKVAEAIEENIESWHEMIKEAESLGGSTRRTRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACILRGSNTRTNFDPCYPHPSSTPALPPKIAKLLLQRLKAKNDSTSCFSSSSSSLSSSDLSTTHQENHQADVCGAESKGFSIDQFADFLYDHEACSASNNEFSDYIEQIDCIASSFESCLAQKDAGREKDTDATQVSSTDSNSRGEKEEESEEEEGLIVEDFRFLDDNVASYYYSPFEIVEEMEEPMEAENYGGDDDEPSMMKAIMNRMKYERKFSASLYAFNGIYECLKLKLHQSGNIKGRTGISDQISKLKKACSNNKNEVNKEEMEKEKEKESIDSSLPSNIDGDLLFWNSLDLPNIF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60441g00026 382 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Stsc60441g00026 382 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Stsc60441g00026 382 MobiDBLite consensus disorder prediction 341 361 - -
Stsc60441g00026 382 Coils Coil 330 359 - -
Stsc60441g00026 382 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Stsc60441g00026 382 MobiDBLite consensus disorder prediction 125 144 - -
Stsc60441g00026 382 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Stsc60441g00026 382 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Stsc60441g00026 382 Coils Coil 8 28 - -
Stsc60441g00026 382 MobiDBLite consensus disorder prediction 208 236 - -
Stsc60441g00026 382 MobiDBLite consensus disorder prediction 341 360 - -
Stsc60441g00026 382 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Stsc60441g00026 382 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Stsc60441g00026 382 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 297 - -
Stsc60441g00026 382 FunFam ethylene-responsive transcription factor RAP2-11 37 96 - -
Stsc60441g00026 382 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60441g00026 Stsc-Chr60441 150477 151625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60441g00026 32 115 AP2-EREBP Transcription Factor Family AT5G19790 69.048 3.54e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc60441g00026 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60441g00026 K09286 - gmx:100796159 360.918