Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60441g00025 ATGGATGGAGGCCGTGGCGCTAGTGGTGTGGATATGTTTCTTCCAAATTATAAACTTGGAAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCGGAACATGTATTGACTGGTCATAAAGTTGCCATTAAGATTCTTAACCGTAGGAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGACTGTTCATGCATCCTCACATTATTCGGCTTTATGAGGTTGTAGAAACTCCAACTGACATTTATGTTGTAATGGAATATGTGAAATCTGGAGAGCTCTTTGACTACATAGTAGAAAAGGGCAGGTTGCCAGAGGATGAAGCCCGCAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGAAATATGGTGGTCCATAGAGACTTGAAGCCAGAGAATTTACTTTTGGACTCCAGGCGCAATGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTCTCTATGCCCTTCTTTGTGGCACCCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATTAAGGGTGGGATATACACTCTTCCTAGTCATCTGTCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTTGATCCTATGAAGAGGATGACCATACCTGAGATCCGGCAACACCCATGGTTCCAAGCTCGTCTTCCTCGTTATTTAGCTGTGCCACCACCAGATACATTGCAACAAGCAAAAAAGATTGATGAGGAGATCCTTCAGGAAGGCACTGTAGCATACTATTTGTTGTTGGACAACAGATTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAATCAATGGATTCTGGTTTTAACCAAATGCATCCCAGTGAAGTTGCTTCTCCAGTTCTTGGGCACCATATTCCCAGCTATATGGATAATCCAGGAGTAGGATTGAGACCACAGTTGCCAGTTGAGAGAAAATGGGCACTTGGGCTTCAGTCTCGGGCCCACCCTCGGGAAATAATGACTGAGGTCCTCAAAGCTCTTCAAGAATTACATGTTTGTTGGAAGAAGATTGGACACTACAACATGAAGTGCAGGTGGGTTGCTGGTATTCCAGGTAATAATGAAGGGATGGTTAACAATCATTACTTTGGAGATGATTCCAGCATCATTGAGAACGATGCTGTTTCTAATAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAACACGGGAAGAAAAGTATCTGCTTGATCTGCAAAGGCTCCAAGGTCCACAGTTTCTCTTCTTGGATCTTTGTGCTGCGTTCCTGGCACAGCTTCGTGTTCTCTGA 1362 0.4258 MDGGRGASGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLPEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSRRNVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTLQQAKKIDEEILQEGTVAYYLLLDNRFRVSSGYLGAEFQESMDSGFNQMHPSEVASPVLGHHIPSYMDNPGVGLRPQLPVERKWALGLQSRAHPREIMTEVLKALQELHVCWKKIGHYNMKCRWVAGIPGNNEGMVNNHYFGDDSSIIENDAVSNNVVKFEVQLYKTREEKYLLDLQRLQGPQFLFLDLCAAFLAQLRVL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60441g00025 453 ProSiteProfiles Protein kinase domain profile. 17 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00025 453 SMART serkin_6 17 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00025 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Stsc60441g00025 453 Gene3D Transferase(Phosphotransferase) domain 1 8 154 - -
Stsc60441g00025 453 Gene3D Transferase(Phosphotransferase) domain 1 155 289 - -
Stsc60441g00025 453 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 404 452 IPR001772 -
Stsc60441g00025 453 CDD STKc_AMPK_alpha 14 238 - -
Stsc60441g00025 453 Gene3D Kinase associated domain 1, KA1 340 451 - -
Stsc60441g00025 453 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Stsc60441g00025 453 FunFam Non-specific serine/threonine protein kinase 340 451 - -
Stsc60441g00025 453 Pfam Protein kinase domain 17 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00025 453 Pfam Protein kinase domain 154 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00025 453 SUPERFAMILY Protein kinase-like (PK-like) 14 257 IPR011009 -
Stsc60441g00025 453 Pfam Kinase associated domain 1 410 452 IPR001772 -
Stsc60441g00025 453 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 15 274 - -
Stsc60441g00025 453 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Stsc60441g00025 453 CDD AMPKA_C 334 450 - -
Stsc60441g00025 453 SUPERFAMILY KA1-like 273 452 IPR028375 -
Stsc60441g00025 453 FunFam Maternal embryonic leucine zipper kinase 8 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60441g00025 Stsc-Chr60441 144622 149841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60441g00025 17 238 CBL-interacting serine-threonine protein kinases AT4G24400 45.276 4.00e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Stsc60441g00025 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60441g00025 K07198 - gmx:100796687 815.839