LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60441g00024	ATGGATGGAGATGCAGAGACATTTTTTCTTCGGAATTATAAGCTAGGAAAAGTGATTGGGCATGGATCTTTTGGTAAGGTCAGAATTGCTCAACATTTATCAACTGGTCATCAAGTTGCTGTTAAGATCCTTAACTGTAACAAGATCAAGCAAATGAAAATGGAAGACAAAGTGAGAAGAGAAATCAAAGTTCTAAGAATGTTCATGCATCCTCACATCGTAAGGCTTTATGAGGTTGTGGAAACTTCAACAGACATTTATGTTGTTATGGAATATGCAGAATCTGGAGACCTCTTTGATTACATGATAATTCAAAAGGACAGGTTGCCAGAGGATGAAGCTCGCAAATTTTTTCAGCAGATAATCTGTGGTGTAGAATACTGTCATAGGAATATGGTGGTTCATAGAGATCTGAAGCCAGAGAATTTACTGTTGAATTCAAGACGTAATGTCAAAATTGCAGATTTTGGGTTTTGCAACATTATGAGAGATGGTCACCCTCTTACTACAAGTTGTGGAAGCCCCCTCTATGCAGCTCCTGAGGTTGTGTCAGGGAAACCATATGCTGGACCAGAAGTAGATGTTTGGAGCTGTGGAGTAATTCTATATGCTCTTCTTTGTGCTCACCTTCCTTTTGAAGATGACAACGTTCCAAATCTCTTCAAGAAAATCAAGGGTGGGATATATAGTGTTCCTCGTCATGTGTCAAGTGGTGCTAGAGATTTGATAAAAGGAATGCTTGTGGTTGATCCAATGAAAAGGTTCACTATCCCTGCCATCCTTCAACACCCATGGTTTACACTTCATCTTCCTCCATATTTATTACCTCTTCCACCACCTCATACAATCCACCAACAACACAAAAAGATTATTGATGAGGATGTCCTTCAAGAATTGGTGATTAAAGGGTTCAACAAGAATCAATTGGTTGAATCACTTAACAACAAGATACAAAATGAGGGTACTGTAGCATACTCTTTGTTATTGGACAAGAAGCTATGTGATTCCAACAATGGCTACATTGGACCAGTGTTTCAACAATCAATTGATTCGGATTTTAACCGCATCATTTCAAGGGAAATTGCTATGAACAATCCAAGAGTATCGTTGAGACCACAGTTCTCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTGTGGTGCCCATCCTCGCGTGATAATAACGGAGGTGCTTAAAGCTCTACGAGAATTAAGTGTTTGTTGGAAGAAAATTGGGCATTACAACATCAAGTGTATGTGGGTTGTTAATAATAATAATAATAATCGTGACTTTGGAGATTATGCTTCCAACAATGATACTGCTTCCTCTGCTTCAAATGTGATCAAATTTGAAGTTCAGCTTTACAAAACTGCAGAAGGAAAATATCTGGTTGATCTTCAAAGGGTTCAAGGTCCACAGCTTCTTTTCTTGGATCTTTGTGTTGCCTTCCTTGTCAAGCTTCGTGTCTTCTAA	1473	0.3904	MDGDAETFFLRNYKLGKVIGHGSFGKVRIAQHLSTGHQVAVKILNCNKIKQMKMEDKVRREIKVLRMFMHPHIVRLYEVVETSTDIYVVMEYAESGDLFDYMIIQKDRLPEDEARKFFQQIICGVEYCHRNMVVHRDLKPENLLLNSRRNVKIADFGFCNIMRDGHPLTTSCGSPLYAAPEVVSGKPYAGPEVDVWSCGVILYALLCAHLPFEDDNVPNLFKKIKGGIYSVPRHVSSGARDLIKGMLVVDPMKRFTIPAILQHPWFTLHLPPYLLPLPPPHTIHQQHKKIIDEDVLQELVIKGFNKNQLVESLNNKIQNEGTVAYSLLLDKKLCDSNNGYIGPVFQQSIDSDFNRIISREIAMNNPRVSLRPQFSAERKWALGLQCGAHPRVIITEVLKALRELSVCWKKIGHYNIKCMWVVNNNNNNRDFGDYASNNDTASSASNVIKFEVQLYKTAEGKYLVDLQRVQGPQLLFLDLCVAFLVKLRVF	490

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc60441g00024	490	Pfam	Protein kinase domain	13	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc60441g00024	490	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	11	326	-	-
Stsc60441g00024	490	Gene3D	Kinase associated domain 1, KA1	383	488	-	-
Stsc60441g00024	490	ProSitePatterns	Protein kinases ATP-binding region signature.	19	42	IPR017441	GO:0005524
Stsc60441g00024	490	ProSiteProfiles	Kinase associated domain 1 (KA1) profile.	441	489	IPR001772	-
Stsc60441g00024	490	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	290	330	IPR015940	-
Stsc60441g00024	490	SUPERFAMILY	KA1-like	346	489	IPR028375	-
Stsc60441g00024	490	SUPERFAMILY	Protein kinase-like (PK-like)	10	293	IPR011009	-
Stsc60441g00024	490	Gene3D	Transferase(Phosphotransferase) domain 1	4	346	-	-
Stsc60441g00024	490	CDD	UBA_SnRK1_plant	291	331	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60441g00024	Stsc-Chr60441	137013	140503	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60441g00024	13	275	CBL-interacting serine-threonine protein kinases	AT4G24400	46.970	6.81e-82	258

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_AMPK	Stsc60441g00024		Pkinase	1.1e-79	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60441g00024	K07198		-	gmx:100796687	653.284

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