Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60441g00024 ATGGATGGAGATGCAGAGACATTTTTTCTTCGGAATTATAAGCTAGGAAAAGTGATTGGGCATGGATCTTTTGGTAAGGTCAGAATTGCTCAACATTTATCAACTGGTCATCAAGTTGCTGTTAAGATCCTTAACTGTAACAAGATCAAGCAAATGAAAATGGAAGACAAAGTGAGAAGAGAAATCAAAGTTCTAAGAATGTTCATGCATCCTCACATCGTAAGGCTTTATGAGGTTGTGGAAACTTCAACAGACATTTATGTTGTTATGGAATATGCAGAATCTGGAGACCTCTTTGATTACATGATAATTCAAAAGGACAGGTTGCCAGAGGATGAAGCTCGCAAATTTTTTCAGCAGATAATCTGTGGTGTAGAATACTGTCATAGGAATATGGTGGTTCATAGAGATCTGAAGCCAGAGAATTTACTGTTGAATTCAAGACGTAATGTCAAAATTGCAGATTTTGGGTTTTGCAACATTATGAGAGATGGTCACCCTCTTACTACAAGTTGTGGAAGCCCCCTCTATGCAGCTCCTGAGGTTGTGTCAGGGAAACCATATGCTGGACCAGAAGTAGATGTTTGGAGCTGTGGAGTAATTCTATATGCTCTTCTTTGTGCTCACCTTCCTTTTGAAGATGACAACGTTCCAAATCTCTTCAAGAAAATCAAGGGTGGGATATATAGTGTTCCTCGTCATGTGTCAAGTGGTGCTAGAGATTTGATAAAAGGAATGCTTGTGGTTGATCCAATGAAAAGGTTCACTATCCCTGCCATCCTTCAACACCCATGGTTTACACTTCATCTTCCTCCATATTTATTACCTCTTCCACCACCTCATACAATCCACCAACAACACAAAAAGATTATTGATGAGGATGTCCTTCAAGAATTGGTGATTAAAGGGTTCAACAAGAATCAATTGGTTGAATCACTTAACAACAAGATACAAAATGAGGGTACTGTAGCATACTCTTTGTTATTGGACAAGAAGCTATGTGATTCCAACAATGGCTACATTGGACCAGTGTTTCAACAATCAATTGATTCGGATTTTAACCGCATCATTTCAAGGGAAATTGCTATGAACAATCCAAGAGTATCGTTGAGACCACAGTTCTCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTGTGGTGCCCATCCTCGCGTGATAATAACGGAGGTGCTTAAAGCTCTACGAGAATTAAGTGTTTGTTGGAAGAAAATTGGGCATTACAACATCAAGTGTATGTGGGTTGTTAATAATAATAATAATAATCGTGACTTTGGAGATTATGCTTCCAACAATGATACTGCTTCCTCTGCTTCAAATGTGATCAAATTTGAAGTTCAGCTTTACAAAACTGCAGAAGGAAAATATCTGGTTGATCTTCAAAGGGTTCAAGGTCCACAGCTTCTTTTCTTGGATCTTTGTGTTGCCTTCCTTGTCAAGCTTCGTGTCTTCTAA 1473 0.3904 MDGDAETFFLRNYKLGKVIGHGSFGKVRIAQHLSTGHQVAVKILNCNKIKQMKMEDKVRREIKVLRMFMHPHIVRLYEVVETSTDIYVVMEYAESGDLFDYMIIQKDRLPEDEARKFFQQIICGVEYCHRNMVVHRDLKPENLLLNSRRNVKIADFGFCNIMRDGHPLTTSCGSPLYAAPEVVSGKPYAGPEVDVWSCGVILYALLCAHLPFEDDNVPNLFKKIKGGIYSVPRHVSSGARDLIKGMLVVDPMKRFTIPAILQHPWFTLHLPPYLLPLPPPHTIHQQHKKIIDEDVLQELVIKGFNKNQLVESLNNKIQNEGTVAYSLLLDKKLCDSNNGYIGPVFQQSIDSDFNRIISREIAMNNPRVSLRPQFSAERKWALGLQCGAHPRVIITEVLKALRELSVCWKKIGHYNIKCMWVVNNNNNNRDFGDYASNNDTASSASNVIKFEVQLYKTAEGKYLVDLQRVQGPQLLFLDLCVAFLVKLRVF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60441g00024 490 Pfam Protein kinase domain 13 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00024 490 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 11 326 - -
Stsc60441g00024 490 Gene3D Kinase associated domain 1, KA1 383 488 - -
Stsc60441g00024 490 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Stsc60441g00024 490 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 441 489 IPR001772 -
Stsc60441g00024 490 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 290 330 IPR015940 -
Stsc60441g00024 490 SUPERFAMILY KA1-like 346 489 IPR028375 -
Stsc60441g00024 490 SUPERFAMILY Protein kinase-like (PK-like) 10 293 IPR011009 -
Stsc60441g00024 490 Gene3D Transferase(Phosphotransferase) domain 1 4 346 - -
Stsc60441g00024 490 CDD UBA_SnRK1_plant 291 331 - -
Stsc60441g00024 490 FunFam Non-specific serine/threonine protein kinase 383 488 - -
Stsc60441g00024 490 CDD AMPKA_C 377 487 - -
Stsc60441g00024 490 FunFam Serine/threonine-protein kinase ppk25 9 268 - -
Stsc60441g00024 490 ProSiteProfiles Protein kinase domain profile. 13 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00024 490 Pfam Kinase associated domain 1 447 489 IPR001772 -
Stsc60441g00024 490 CDD STKc_AMPK_alpha 10 266 - -
Stsc60441g00024 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Stsc60441g00024 490 SMART serkin_6 13 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00024 490 FunFam Non-specific serine/threonine protein kinase 2 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60441g00024 Stsc-Chr60441 137013 140503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60441g00024 13 275 CBL-interacting serine-threonine protein kinases AT4G24400 46.970 6.81e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Stsc60441g00024 Pkinase 1.1e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60441g00024 K07198 - gmx:100796687 653.284