Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60441g00022 ATGGGTTGTGTTAACTCCAAGAAATCCCGCGCCGGAGATCCCTCTGCTTCGCCGGCCGACGATGGCGTAGCCTACGTCAAATCCTATTCCCGGAGAGGCAGAGTCGGGTCGGGTCGCGTTGGTGCGGTTCCCTCCTCTTCCCCTGCTTCCAGAGGCCGTTCTTCCACCTCCGGCGTGGTTTCCGGTCAGGCTTCGGAAGGAGGCGGTGACGCGAAAGGCGAGGAGGTGGCGGGGGAGAAGCTAGAGAAGAAGAGTAATAAGGATATGGTGTTGAGAGATAATGGTGATGGTGGGAGAGGGAGTAGCGTGAAGGCAATTGGGGGCTTGAATACGAGGATTGGTGTGCCGCATAGATTTGTGGAAGCTGAGAGCATTGCTGCTGGTTGGCCACCGTGGCTCACATCTGTTGCCGGCGAAGCCATTCATGGTATGGTCCCTCTCAGAAGTGATGCTTTTGAGAAACTGGACAAGATTGGACAAGGTACATATAGCAGCGTTTTCCAAGCACGTGAAGTTCAGAGTGGAAGGATGGTTGCCTTGAAGAAGGTTCGCTTTGACAATTTCCAACCGGAGAGCATTAGGTTCATGGCAAGAGAGATTATAATCCTCCGTGCACTTGACCATCCAAACGTCATGAAATTGGAGGGTATAATCACTTCTCCATTGTCACACAGCATCTACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTTCTCCTGACATCAAGTTCACTGAATCACAGATTAAATGTTACATGAGGCAGCTATTAAGTGGCATTGAGCATTGTCACCTTAGAGGTATTATGCATCGCGACATTAAAGTTTCAAACATATTAGTGAACAATGAAGGTATTCTCAAGATTGGAGACTTTGGATTAGCAAATACACTTAGCCCAAACAACAAGAATCCTTTAACAAGTCGTGTGGTTACTCTCTGGTATCGCCCTCCCGAGCTCTTGATGGGATCAACAAATTATGGAGTTTCTGTTGATCTATGGAGTATCGGCTGCGTATTTGCAGAACTTTTCCTGGGGAAGCCAATCCTTAAGGGCAGAAATGAGGTTGAACAATTGCACAGAATCTTTAAGCTTTGTGGATCTCCACCAGAAGAGTTCTGGAGAAAGTGTAAGCTTCCTCTTGCAACCATGTTTAAACCTCAGACTACCTATGAAAGCTCTCTTTGGGAGAGGTGTAAAGGTTTTCCTCCAACTGCTGTAAGCCTAATTGAGACTCTACTGTCCATTGATCCTTCAAAGCGTGGCACTGCCTCCTCTGCACTTATGTCTGAGTATTTTAGCACAAAGCCGCATGCTTGCAACCCATCACTCCTTCCAAAGTATCCACCAAGCAAAGAACTGGATGCTAAATATCGGGATGATGTACAAAGGAAAAAGGCTGGAGTGCCGCGTGAGATTGCTGCTACTACATCGAAAAGGCCTAAAAGGGTCCAAAAGGTTTTGGATGGCCCCAGCTATAACAATAAATCAGCTACAAAAGAGGAATTGCATCACAATGCTCAAAATTCTGGTAGAGATGATAAAGCATACCAGACAAAGGGAAGAGTTGGAGTTATGCCAAAGGAAATGCAACATAAACCTTTATATGATGCTAGGTCAGAGGCTGCCAAAACAAATGCTTCTCATGGCTATAGTGTACACTCTGGACCGGGAATGGCAGCGGCCTCAGGGTCTACCGGCTTTACTTGGGCTGCTAAGAGGCGAAAAGATGCTGCATCAACTTTATCAGATGGCTCAAGAAGTAAGATCAGTGGACTGGATCCAAACTTTGCCAAAGGAACATATGATTTATCAAAACAAGGGATTGATGTTTCACAAAGAAACCAGAGCTACCCAAACTTTCATGATGAAACTTCCCATCGTCAAAGTGAATCATTTGATGGAGCTGATGAGTTCTTAGATTATGATCCCACAGAAAGAGCAGATTCTATGATAAGTACTCAGGGCAACATAAATGAAGACTTGCATTTTGAGAATGCCAGGCGAGGAGCTAGAAAATCACGGTTTGGTTAA 2043 0.4586 MGCVNSKKSRAGDPSASPADDGVAYVKSYSRRGRVGSGRVGAVPSSSPASRGRSSTSGVVSGQASEGGGDAKGEEVAGEKLEKKSNKDMVLRDNGDGGRGSSVKAIGGLNTRIGVPHRFVEAESIAAGWPPWLTSVAGEAIHGMVPLRSDAFEKLDKIGQGTYSSVFQAREVQSGRMVALKKVRFDNFQPESIRFMAREIIILRALDHPNVMKLEGIITSPLSHSIYLVFEYMEHDLAGLVSSPDIKFTESQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTLSPNNKNPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSIGCVFAELFLGKPILKGRNEVEQLHRIFKLCGSPPEEFWRKCKLPLATMFKPQTTYESSLWERCKGFPPTAVSLIETLLSIDPSKRGTASSALMSEYFSTKPHACNPSLLPKYPPSKELDAKYRDDVQRKKAGVPREIAATTSKRPKRVQKVLDGPSYNNKSATKEELHHNAQNSGRDDKAYQTKGRVGVMPKEMQHKPLYDARSEAAKTNASHGYSVHSGPGMAAASGSTGFTWAAKRRKDAASTLSDGSRSKISGLDPNFAKGTYDLSKQGIDVSQRNQSYPNFHDETSHRQSESFDGADEFLDYDPTERADSMISTQGNINEDLHFENARRGARKSRFG 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60441g00022 680 MobiDBLite consensus disorder prediction 1 103 - -
Stsc60441g00022 680 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524
Stsc60441g00022 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Stsc60441g00022 680 FunFam probable serine/threonine-protein kinase At1g54610 139 234 - -
Stsc60441g00022 680 MobiDBLite consensus disorder prediction 627 648 - -
Stsc60441g00022 680 Gene3D Transferase(Phosphotransferase) domain 1 235 474 - -
Stsc60441g00022 680 MobiDBLite consensus disorder prediction 72 94 - -
Stsc60441g00022 680 MobiDBLite consensus disorder prediction 501 520 - -
Stsc60441g00022 680 MobiDBLite consensus disorder prediction 465 520 - -
Stsc60441g00022 680 SUPERFAMILY Protein kinase-like (PK-like) 146 440 IPR011009 -
Stsc60441g00022 680 CDD STKc_CDK9_like 152 436 - -
Stsc60441g00022 680 ProSiteProfiles Protein kinase domain profile. 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00022 680 MobiDBLite consensus disorder prediction 43 63 - -
Stsc60441g00022 680 SMART serkin_6 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00022 680 MobiDBLite consensus disorder prediction 665 680 - -
Stsc60441g00022 680 PANTHER CELL DIVISION PROTEIN KINASE 150 440 - -
Stsc60441g00022 680 MobiDBLite consensus disorder prediction 618 680 - -
Stsc60441g00022 680 Gene3D Phosphorylase Kinase; domain 1 142 234 - -
Stsc60441g00022 680 Pfam Protein kinase domain 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60441g00022 680 FunFam probable serine/threonine-protein kinase At1g54610 235 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60441g00022 Stsc-Chr60441 111885 115783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60441g00022 150 468 Core Cell Cycle Gene Families AT5G10270 47.904 8.65e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc60441g00022 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60441g00022 - - lja:Lj1g3v2982400.1 814.683