Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60441g00021 ATGACCGCCACCGACGCCAATTCCGCTGCGGCGCCGCCGCCGCCGCAGTCATCACGCCCAACGATAACCCTCCCTCCTCGCCCTTCAGCGGAGGCCTTCTTCTCCGGCGCCGGCGCTGGCATCAGCCCCGGCCCCATGACCCTGGTCTCCAGCTTCTTCTCCGATGGCGGCGGCTCCGACTCCGACTACCGCTCCTTCTCTCAGCTTCTAGCCGGCGCCATGGCGTCCCCGCTTGCCTTTGGCGGCGCCGCCCGGCCCCCCTTCCCGCCTCCCGAGAATCCCGGCGAGAATTCTGCGGAGGAAGGAGCGCAGAAGAGCTTAGGGTTCAAGCAGAGTAGGCCCATGAACTTGGTGGTTGCGCGTTCTCCAATGTTCACTATCCCTCCTGGGTTGAGTCCTTCTGGGTTTCTCAATTCGCCGGGGTTCTTTTCCCCTCAGAGTCCCTTTGGGATGTCCCACCAACAAGCTTTAGCACAAGTTACTGCTCAAGCTGTGTTTGCTCAATCTCAAATGCATATGCAAGCTGATTATCAGACGCCTGCAGTAACAGCTCCCACCAACCCATCAGTAGAGCAGCCATCTTTTACTCAAAATGAAGCTTCGCAGCAACAAGTGGTACCGTATGTATCAGAACCTAGCAATGCTCAAGTGGAAACATCAGATATTTCTAATGCTGATAATAAGAAATATCAACCATCTTCCACGGTCATTGACAAACCTGCAGATGATGGTTACAACTGGCGTAAGTATGGGCAGAAGCAGGTGAAGGGTAGCGAGTTTCCACGGAGCTACTACAAGTGTACGCATTTGAATTGCCCTGTTAAGAAAAAGGTTGAGCGTGCCCCCGATGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAACCATGAAAAGCCTCAGGCAAATAGGCGTGTAAAAGATAATAGTGATTCAAATGGAAATTTGAATGTTCCCCCCAAGTCTGAGTTGAATTCTCAGGGTTGGGTTGGAAATGCAACTAAGATTGCAGAAAGCGTGCCTGATTGTTCGGTTCCTGAGAGTGACCAGACCTCCAATCAAGGGGCTACTAGGTTACCTGGATCAAGTGAGAGTGAGGAAGTAGGTAATGTAGATAATAGGGAAGAGGTAGATGATGGTGAGCCTAACCCTAAGAGAAGGAACACTGATGTTGCGGTTTCTGAAGCACCTCTATCGCAGAAAACCGTTACAGAACCAAAAATCATCGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGAAAGTATGGTCAGAAAGTAGTGAAGGGAAATCCTCATCCAAGGAGTTACTACAAATGCACTAGTGCAGGATGCAATGTGCGGAAGCATGTTGAGAGAGCATCGTCGGATCCCAAAGCCGTCATAACTACTTACGAGGGAAAACATAACCACGATGTACCTGCTGCTAGAACCAGTAGCCACAACACGGCTAACAACAATTCGGTGCCACTGAAGCCGCATAATCCGGTGCCGCAGAAGCATCCTCTACTTAAAGACATGGATTTCGGAAGCAATGACCAAAGACCAGTACATCTGCGTTTAAAAGAAGAGCAAATCATAGTGTAA 1602 0.5019 MTATDANSAAAPPPPQSSRPTITLPPRPSAEAFFSGAGAGISPGPMTLVSSFFSDGGGSDSDYRSFSQLLAGAMASPLAFGGAARPPFPPPENPGENSAEEGAQKSLGFKQSRPMNLVVARSPMFTIPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVFAQSQMHMQADYQTPAVTAPTNPSVEQPSFTQNEASQQQVVPYVSEPSNAQVETSDISNADNKKYQPSSTVIDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGNLNVPPKSELNSQGWVGNATKIAESVPDCSVPESDQTSNQGATRLPGSSESEEVGNVDNREEVDDGEPNPKRRNTDVAVSEAPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASSDPKAVITTYEGKHNHDVPAARTSSHNTANNNSVPLKPHNPVPQKHPLLKDMDFGSNDQRPVHLRLKEEQIIV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 481 498 - -
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 181 256 - -
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 307 333 - -
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 476 502 - -
Stsc60441g00021 533 ProSiteProfiles WRKY domain profile. 242 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 181 234 - -
Stsc60441g00021 533 FunFam WRKY transcription factor 230 301 - -
Stsc60441g00021 533 SUPERFAMILY WRKY DNA-binding domain 411 479 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60441g00021 533 Pfam WRKY DNA -binding domain 420 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60441g00021 533 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60441g00021 533 SMART WRKY_cls 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60441g00021 533 SMART WRKY_cls 419 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60441g00021 533 Gene3D WRKY domain 404 480 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60441g00021 533 Gene3D WRKY domain 227 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60441g00021 533 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 139 497 IPR044810 GO:0003700
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 278 399 - -
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 1 38 - -
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 344 367 - -
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 81 111 - -
Stsc60441g00021 533 ProSiteProfiles WRKY domain profile. 414 479 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60441g00021 533 MobiDBLite consensus disorder prediction 278 306 - -
Stsc60441g00021 533 FunFam WRKY transcription factor 33 406 472 - -
Stsc60441g00021 533 SUPERFAMILY WRKY DNA-binding domain 239 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60441g00021 Stsc-Chr60441 104686 109074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60441g00021 18 531 WRKY Transcription Factor Family AT2G03340 53.645 3.75e-154 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc60441g00021 WRKY 9.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60441g00021 - - gmx:100796679 800.816