Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60441g00005 ATGGCAGCCAGCACTACTTTCTCTCTCTGTTTTGCTGCTGCCACTTCTTCCTCACCATCATCTTCATCATCTTCTTCTTCTAATCATAATTCTAATCCTTTAACGCCATTGAACCAGAGGCCGAGGTCTGTGAGAGTAGCAAAACGCTTCGTTTCGTCTTCGGTGGCAGCGCCTTTATCTTCCTTGTGCTTCGGTGCTTCTGCTTCTTCAGTATTCAGCTCCAAAGCTAGGGTTTCCACGGCGTTATCGGCGGTGGTTGATGAAGAGACCGCGGTTGCGGAACGGGAACGTGGTTTGGCGGAAAACGATGGCGGTTCTGAGGAGGAAGAGCAATGGAAACTGCCGCGAGCGACGGAGGTTTACGTCTGCAACCTTCCAAGGAGCTGTGGCGTCGAACAGCTACGTCAGATGTTCGAGGCTCACGGACCTATTCTCTCCGCTGAGGTTTGCCGTAATGCTGATACGGGTGAGAGTAGAGGCTGTGCTTATGTGACATTGTCATCTGTTGCCTCTGCAAGAAATGCAGTCATTGCCTTGGATGGATCGGATGTTGGTGGACGTGAGATGCGGGTTAGATTCTCGGTTGAGATGAATCCCCAGAGAAGGAACCTTGACACTGCAAACGCTTCACCGAAGAGAGTTTTATACTATGAAGCTCCTCATAAGTTGTATGTTGGTAATCTTGCCAGGGCAGTTAGACCTGAAGAGTTGAGAAATCTCTTCAGCAAATTCGGCAATGTTGCTAGCGTAAGGTTGTTGCAAGATCGAAAACAAGGGCGAACCCGGGTTTATTCGTTCCTATCTTTCCTATCGGAGAAAGAACGTGATGCTGCATTGACCCTCAATGGAACGGAACTTTGTGGTCGTACGTTGGTGGTTAGAGTGGGTGTAGATAAGGGTGAAGCTTAA 909 0.4906 MAASTTFSLCFAAATSSSPSSSSSSSSNHNSNPLTPLNQRPRSVRVAKRFVSSSVAAPLSSLCFGASASSVFSSKARVSTALSAVVDEETAVAERERGLAENDGGSEEEEQWKLPRATEVYVCNLPRSCGVEQLRQMFEAHGPILSAEVCRNADTGESRGCAYVTLSSVASARNAVIALDGSDVGGREMRVRFSVEMNPQRRNLDTANASPKRVLYYEAPHKLYVGNLARAVRPEELRNLFSKFGNVASVRLLQDRKQGRTRVYSFLSFLSEKERDAALTLNGTELCGRTLVVRVGVDKGEA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60441g00005 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Stsc60441g00005 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Stsc60441g00005 302 MobiDBLite consensus disorder prediction 15 41 - -
Stsc60441g00005 302 SMART rrm1_1 222 294 IPR000504 GO:0003723
Stsc60441g00005 302 SMART rrm1_1 119 192 IPR000504 GO:0003723
Stsc60441g00005 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 190 IPR000504 GO:0003723
Stsc60441g00005 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 291 IPR000504 GO:0003723
Stsc60441g00005 302 MobiDBLite consensus disorder prediction 15 39 - -
Stsc60441g00005 302 SUPERFAMILY RNA-binding domain, RBD 115 204 IPR035979 GO:0003676
Stsc60441g00005 302 Gene3D - 202 302 IPR012677 -
Stsc60441g00005 302 Gene3D - 73 201 IPR012677 -
Stsc60441g00005 302 PANTHER OS02G0815200 PROTEIN 15 295 - -
Stsc60441g00005 302 SUPERFAMILY RNA-binding domain, RBD 220 300 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60441g00005 Stsc-Chr60441 39923 42049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60441g00005 116 301 Eukaryotic Initiation Factors Gene Family AT3G16380 28.877 4.96e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60441g00005 - - pcin:129288259 289.271