Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60440g00037 ATGAGCCATCTAAAATTACTCATTCTCAGAGAAGTGAATTTCTCAGGATGCCTTGATTTTCTTTCCAATGAGTTGGGATATCTTGATTGGGAAGACTATCCTTTCACATGTTTGCCATCAAGCTTTCAGCCAAATAAACTAGTTAATTTAATGCTGCACCATAGCAACATCAAAGAACTCTGGCAGGGAATAAAGGATCTACATAATTTGGAACGTATGGAACTATGCCATTCCAAAAATCTTGTAAAGATACCAGATTTATCTCAGGCCCCGAATCTTAAGTACCTAAATCTTAAAGGATGTGTTAAACTTGTTCATCTTGATGCATCTATTGGTTCACTAGAAAAGCTTCATTTCTTGAATCTGGAAAACTGCGAAAATCTTTTGTTAGAGAAACCAAGACAAAGGGAGCAGTTGTTGAACAGAGGTCAAATGGTAGAAAGGCACGTGACATCCTCCATATACAAAACTCTTACAAGACCTCTCCACCATTTTCTCTCTTCTAGAAGGCATCCCAATTCAGTTGGTTTGTTGGTGCCTTGTTTCTCTCGTTTCCCAGCTTTGACGTTTCTTGACATAAGTTTCTGTAACCTACTTCAAATACCTGATGCTATTGGACAGTTACGTTGTTTACAAGATTTAAACATAGGGGGAAACAATATTGTTACGCTACCTCATTGCATCGAGGAACTTCCCATGCTAAGGTGGTTGAATTTGGAGTACTGTAAGCATCTAAAGTGGTTGCCAAGTACCCTTTTGCCAAAAGGAGGTAAGTATGGAGGAATATATGTTTTCAACTGCCCCAATTTGAGTGACACGGAAAGTTGTCGTCTCACAGCTATTTCATGGATGATCAAATTAGTTCAGGTGAACATGCAATGCTCTTTCCACGATTACGTGGTCGATGTTGTTATTCCAGGAAGTAAAATTCCAAGGTGGTTCCACAAACAAAATACGGGTGATTCAGTGAGCCTGGATCCATCTCCAATTCTAGATGACAATAATTGGATTGGCATTGCTTGTTGTGTAATACTTGCTGTGCATGATACTCCAACTCAATTCGTTCAAGTAGCTGTAGATTCTACCGCTCTAATTTATTGTGGTTTTCGTCGTCATGGGTATGAGGGCCTTTTTTCCAAAGTTCCAATACATTTCAAGAAAGATCTGACCACAACTGAATTAGATCATATGTTGCTAATGTTTGTCTCCCGGGAAATTTTCATTTCTCGTTATATAATTGATTTAATTGGAGGAGAATCTGATCTTCATGTTATTGGATTGGCCTTTGCCACTATGAGTAATTATCCAAAAGTAGTAGAAGTGAAGAGTTGTGGTTGCCGTTGGGTATTTAAGCAAGATTTGGAACAACTAAACCCAGCAATGATGTTTAGCGCAAGTTCTTCATCTCAGGATCAGAAGCACAAGTTTTTGGCAATTCAAGATCACCAATAG 1452 0.3864 MSHLKLLILREVNFSGCLDFLSNELGYLDWEDYPFTCLPSSFQPNKLVNLMLHHSNIKELWQGIKDLHNLERMELCHSKNLVKIPDLSQAPNLKYLNLKGCVKLVHLDASIGSLEKLHFLNLENCENLLLEKPRQREQLLNRGQMVERHVTSSIYKTLTRPLHHFLSSRRHPNSVGLLVPCFSRFPALTFLDISFCNLLQIPDAIGQLRCLQDLNIGGNNIVTLPHCIEELPMLRWLNLEYCKHLKWLPSTLLPKGGKYGGIYVFNCPNLSDTESCRLTAISWMIKLVQVNMQCSFHDYVVDVVIPGSKIPRWFHKQNTGDSVSLDPSPILDDNNWIGIACCVILAVHDTPTQFVQVAVDSTALIYCGFRRHGYEGLFSKVPIHFKKDLTTTELDHMLLMFVSREIFISRYIIDLIGGESDLHVIGLAFATMSNYPKVVEVKSCGCRWVFKQDLEQLNPAMMFSASSSSQDQKHKFLAIQDHQ 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60440g00037 483 Pfam Leucine rich repeat 186 242 IPR001611 GO:0005515
Stsc60440g00037 483 SUPERFAMILY L domain-like 12 272 - -
Stsc60440g00037 483 Gene3D Ribonuclease Inhibitor 1 150 IPR032675 -
Stsc60440g00037 483 Gene3D Ribonuclease Inhibitor 163 279 IPR032675 -
Stsc60440g00037 483 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 268 IPR044974 GO:0006952
Stsc60440g00037 483 Pfam C-JID domain 305 455 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60440g00037 Stsc-Chr60440 199835 201665 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60440g00037 12 237 WRKY Transcription Factor Family AT4G12020 32.950 8.72e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60440g00037 - - ahf:112789053 638.262