Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60440g00036 ATGGAAGTTGTGGTGGCCAAAGCCTTCAAACCAAGCTTAAGGACAGACCTTATTTTCCACCCACCACTTCCACTCGCCGCCGATAAGTTTCTCTGCTTCAACAACGCCGCCGCCCTTGCTGATGATTTCTCCGTCGACGACCTCCTTGACTTCTCCGAACAAGAACACCAGGAAAAAGACAACATCTCGGCAACTTCCTCACAGGACCCTACAGAAAACGATACCAACTCCAACTCCTCCACCGCCGCCCTACACTCCCACTCCATTTTCGCCGCCGAATTTTCCGTTCCCGACGATGATTTGGCAGAGCTGGAGTGGGTTTCTCGCTTTGTGGACGATTCAGTACCGGAGCGCTCTCTCTTGTACCCTGTTCCTTCTGAGCTAACAAGGGCCCAGGCCCAACCCCAACCTAAACCGGCCTCATCTCTAACTTCTCTTCCAACTGGTGTCCCTGTCAAGCCCAGGACCACCAAGACAAGGAAACCCAACGCCCGCTTATTACGGCCCTTTATTAGCACCTTGCTCTCGCCGGCGAAGAAGCAGAAGAGAAAGCCCGAGGACCAAGCCTGTGGGTTCCAGTTTCAGCGACGGTGCAGTCATTGCCAAGTTCAGAAAACGCCGCAGTGGAGAGCAGGCCCGATGGGCCCCAAAACACTCTGCAACGCTTGTGGAGTCCGGTACAAGTTGGGCAGGCTTTTTCCAGAGTACAGGCCCGCATGCAGCCCGACGTTCTCAGGAGATATTCACTCAAACAGCCACCGTAAGGTGTTAGAGATGAGGCGTAGGAAGGAGATGTCTAGGCCAGAGCCCGGTCCAGAGCGGGCCCACATGTTTCCAAGTTGCTGA 846 0.5473 MEVVVAKAFKPSLRTDLIFHPPLPLAADKFLCFNNAAALADDFSVDDLLDFSEQEHQEKDNISATSSQDPTENDTNSNSSTAALHSHSIFAAEFSVPDDDLAELEWVSRFVDDSVPERSLLYPVPSELTRAQAQPQPKPASSLTSLPTGVPVKPRTTKTRKPNARLLRPFISTLLSPAKKQKRKPEDQACGFQFQRRCSHCQVQKTPQWRAGPMGPKTLCNACGVRYKLGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEMSRPEPGPERAHMFPSC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60440g00036 281 Pfam GATA zinc finger 198 231 IPR000679 GO:0006355|GO:0043565
Stsc60440g00036 281 FunFam GATA transcription factor 187 272 - -
Stsc60440g00036 281 PANTHER GATA TRANSCRIPTION FACTOR 38 274 - -
Stsc60440g00036 281 MobiDBLite consensus disorder prediction 54 81 - -
Stsc60440g00036 281 MobiDBLite consensus disorder prediction 259 281 - -
Stsc60440g00036 281 PIRSF Txn_fac_GATA_plant 7 278 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc60440g00036 281 CDD ZnF_GATA 197 254 IPR000679 GO:0006355|GO:0043565
Stsc60440g00036 281 ProSitePatterns GATA-type zinc finger domain. 198 223 IPR000679 GO:0006355|GO:0043565
Stsc60440g00036 281 MobiDBLite consensus disorder prediction 131 159 - -
Stsc60440g00036 281 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 255 - -
Stsc60440g00036 281 ProSiteProfiles GATA-type zinc finger domain profile. 196 229 IPR000679 GO:0006355|GO:0043565
Stsc60440g00036 281 MobiDBLite consensus disorder prediction 63 81 - -
Stsc60440g00036 281 SMART GATA_3 192 246 IPR000679 GO:0006355|GO:0043565
Stsc60440g00036 281 Gene3D - 193 271 IPR013088 GO:0006355|GO:0008270
Stsc60440g00036 281 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60440g00036 Stsc-Chr60440 195516 196816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60440g00036 6 266 C2C2-Gata Transcription Factor Family AT4G34680 43.233 2.05e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc60440g00036 GATA 2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60440g00036 - - adu:107476627 419.083