Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60440g00026 ATGAGAACTCTCTGCGACGTATGCGAAAACGCCGCTGCAATCTTATTCTGCGCCGCCGACGAGGCTGCTCTTTGCCGCGCCTGCGATGACAAGGTGCACATGTGTAACAAACTTGCTAGTAGACATGTTCGAGTTGGACTTGCTGATCCTAGTGATGTTCCTCGTTGTGATATATGTGAAAACGCACCTGCTTTCTTTTATTGTGGGATAGATGGTAGTTCGTTGTGTCTACAATGTGATATGATTGTACATGTTGGTGGTAAAAGAACCCATGAAAGGTATCTCTTGTTGAGACAGAGAATTGAGTTTCCAGGTGACAAAACTGGTAGATTGGATGAACTGGGAATGCAAACCTTAGATCAAAATGGAAAAACGGACAAAAAGCTGTTTGATCTTAATACTAGGCCACAGCGGATAAATGGCTCAACATCAAACAACTTGGATAAGGAGATGTTAGGTGGTAACAATCATGATTCTATTGGTGTTGTACCAGTGGAATTGTTCAAACAAGAAGCTGAGAAGTAA 525 0.4248 MRTLCDVCENAAAILFCAADEAALCRACDDKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCGIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRIEFPGDKTGRLDELGMQTLDQNGKTDKKLFDLNTRPQRINGSTSNNLDKEMLGGNNHDSIGVVPVELFKQEAEK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60440g00026 174 MobiDBLite consensus disorder prediction 135 152 - -
Stsc60440g00026 174 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Stsc60440g00026 174 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Stsc60440g00026 174 Gene3D Classic Zinc Finger 2 95 - -
Stsc60440g00026 174 CDD Bbox1_BBX-like 56 96 - -
Stsc60440g00026 174 FunFam B-box zinc finger protein 19 2 92 - -
Stsc60440g00026 174 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Stsc60440g00026 174 MobiDBLite consensus disorder prediction 135 155 - -
Stsc60440g00026 174 CDD Bbox1_BBX-like 4 47 - -
Stsc60440g00026 174 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc60440g00026 174 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 131 - -
Stsc60440g00026 174 SMART bboxneu5 51 96 IPR000315 GO:0008270
Stsc60440g00026 174 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60440g00026 Stsc-Chr60440 150513 153020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60440g00026 1 174 C2C2-CO-like Transcription Factor Family AT4G38960 66.667 3.04e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc60440g00026 zf-B_box 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60440g00026 - - tcc:18607689 277.33