Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60440g00020 ATGGGCTTCTTATTTTTGCTTCTGTTATTGGGTTCCTTATGTTCATCTGTGCTGCCTGATGCACAAGGGGATGCTCTATATGCATTGAAGCAATCACTGAATGCTTCATCTAACCAGCTTACTGATTGGAATGTAAATCAAGTCAACCCTTGTACTTGGTCGCGTGTTAACTGTGACCCGAGCTACAATGTCATTCAAGTTTCACTGGCATTAATGGGACTCACAGGAACCTTGACCCCAAGAGTAGGAGTTCTAAAAAATCTTACCGCTCTTTCTTTGCAAGGGAATGCCATCACAGGAAACATACCAAAAGAATTAGGAAATCTGACAAACTTAGGTAGGTTGGATTTGGAAAATAACAGACTGACCGGCCAAATACCATCTTCCTTTGGAAATCTGAAAAAGCTCCAATTCTTGACACTAAGTCAAAACAATCTCAATGGGACTATACCAGAATCAATTGGCAATCTCCCAAACTTGATCAGTGTCATGTTAGATTCAAATAATCTTAGTGGTGAAATCCCGGAGCAATTGTTCAAAGTAACTAAGTACAATTTCACTGGAAATAAATTGAACTGTGGCGTGAATTATCCTCATCCTTGTGCATCTGATAATACAGACCAAGGTTCATCACATAAATCAAAAGTTGGACTCATAATTGGAATTATTATTGGGTTAATTGTTATTTTCTTCCTTGGTGGCTTGTTATTCTTTTGGTGCAAAAATAGACACAATGGTTACAAACGTGAAGTTTTTGTTGATGTTGCAGGTGAAGTTGACCGACGAATTGCATTTGGTCAACTAAAGAGATTTGCATGGAGAGAACTACAGATAGCAACAGACAACTTCAGTGAGAAAAATGTATTAGGACAAGGAGGATTTGGAAAGGTTTACAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTGAAAAGGTTAACTGATTATGAAAGCCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAAATGATAAGTGTAGCTGTTCATAGAAACCTGTTAAGATTGATTGGATTTTGCACAACTCCAACTGAGCGTCTCTTAGTTTATCCCTTCATGCAAAATTTGAGTGTTGCCTATCGTCTAAGAGAACTTAAGCCTGGGGAACCTGTTTTAGATTGGCCTACAAGAAAAAGAGTGGCTCTGGGAACAGCTCGTGGACTTGAATATCTTCATGAGCATTGCAATCCCAAAATTATTCATCGAGATGTGAAGGCAGCTAATGTATTACTGGATGAAGATTTTGAGGCAGTTGTTGGCGACTTTGGTTTGGCAAAGTTAGTTGATGTCCGTAAGACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCATATAGCTCCTGAGTACTTGTCCACTGGAAAGTCCTCAGAAAGGACTGATGTTTTTGGATATGGGATTATGCTTTTGGAGCTAGTTACAGGTCAAAGGGCAATTGACTTCTCACGTTTGGAAGAGGAAGATGATGTGCTATTGCTTGACCATGTTAAGAAATTAGAACGGGAGAAAAGATTAGATGCTATTGTTGATCGCAATCTAAATAAAAATTACAATATACAAGAGGTAGAAATGATGATACAAGTTGCATTGCTCTGCACACAAGCAACACCAGAGGATCGGCCCCTGATGTCCGAGGTTGTAAGAATGCTAGAAGGAGAAGGTTTGGCTGAAAGGTGGGAGGAATGGCAGCATGTAGAAGTCAATCGGAGGCAAGAATATGAGAGATTACAAAGAAGATTCGACTGGGGCGAAGATTCAGTCTACAATCAAGATGCCATTGAGTTGTCTGGTGGGAGATAA 1821 0.4009 MGFLFLLLLLGSLCSSVLPDAQGDALYALKQSLNASSNQLTDWNVNQVNPCTWSRVNCDPSYNVIQVSLALMGLTGTLTPRVGVLKNLTALSLQGNAITGNIPKELGNLTNLGRLDLENNRLTGQIPSSFGNLKKLQFLTLSQNNLNGTIPESIGNLPNLISVMLDSNNLSGEIPEQLFKVTKYNFTGNKLNCGVNYPHPCASDNTDQGSSHKSKVGLIIGIIIGLIVIFFLGGLLFFWCKNRHNGYKREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPLMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60440g00020 606 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Stsc60440g00020 606 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Stsc60440g00020 606 FunFam Somatic embryogenesis receptor kinase 1 252 359 - -
Stsc60440g00020 606 Pfam Protein kinase domain 284 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60440g00020 606 SUPERFAMILY L domain-like 22 192 - -
Stsc60440g00020 606 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 568 - -
Stsc60440g00020 606 ProSiteProfiles Protein kinase domain profile. 283 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60440g00020 606 Gene3D Transferase(Phosphotransferase) domain 1 360 577 - -
Stsc60440g00020 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Stsc60440g00020 606 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Stsc60440g00020 606 SMART serkin_6 283 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60440g00020 606 FunFam Putative LRR receptor-like serine/threonine-protein kinase 19 203 - -
Stsc60440g00020 606 FunFam Somatic embryogenesis receptor-like kinase 1 360 577 - -
Stsc60440g00020 606 Gene3D Phosphorylase Kinase; domain 1 252 359 - -
Stsc60440g00020 606 SUPERFAMILY Protein kinase-like (PK-like) 263 558 IPR011009 -
Stsc60440g00020 606 SMART LRR_typ_2 133 156 IPR003591 -
Stsc60440g00020 606 SMART LRR_typ_2 157 181 IPR003591 -
Stsc60440g00020 606 SMART LRR_typ_2 109 132 IPR003591 -
Stsc60440g00020 606 SMART LRR_typ_2 85 108 IPR003591 -
Stsc60440g00020 606 Gene3D Ribonuclease Inhibitor 20 202 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60440g00020 Stsc-Chr60440 91761 96404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60440g00020 1 606 Receptor kinase-like Gene Family AT5G10290 78.053 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc60440g00020 Pkinase 5.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60440g00020 - - gmx:100793416 1053.89