Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60440g00016 ATGTTCCAAATTGCTCCAGAGCCTGCACATATGCCACCAAGCGGTTCACTTTTCCTGTTTGATCGGAAGGTGCTGAGATACTTTAGAAAAGATGGTCACAACTGGAGAAAGAAAAAGGATGGGAAAACAGTGAGGGAAGCTCATGAGAGACTCAAGGCTGGAAGTGTGGATGTGTTGCACTGCTACTATGCACATGGAGAAGAAAATGAAAATTTTCAAAGACGCACATATTGGATGCTCGAAGAGGAACTCTCACACATTGTTCTTGTCCATTATAGGGAAGTGAAGGCAACTAAGGCAAATTTTAGAGGTGCTGCCAAAGAAAACCAAGAATCTCTTCCCTATGCACAAGTTGACAAACTACCAGGTCCCACAGCGAAGGAAATTTCTTCATCATGTAGTCTTGATCCACATAACTACCAGGTTCCATCACAACAAACTATAGATGCAACAAGCATGAACAGCACTCAAGCAACAAAATATGAAGAAGCTGAGTCAGAAGACTATTCCTTCCTTGAGACACAACACCCAGTTGTCCAGAAGATTCCTGATCCTTATTGCCCGCTGCTGTTCGTAAATGAACAAGAGAAGTTGTGTGGCACTCCTGGGATGAATCATACCAAGCTCAGTCAAGCTTCCAAAATCAAAGACATTCATAATATTAGATTGGCATATGAACCCCCGCAACACCTTGGCTTTTCAATGTGGGAATATGTCTTGGAAAATAATGGGAGAAGTCAATACTTGCCTTTTCAACCTGTACTCCCTGAAATCCAAACTGGTAACATGGGAATCAATAGCAATCCCTCTCTGAGGGATGAGATAATGAGGCAAAAAAATATTGTACAAGTTGAAGGACATTGGCAGGTAATGGATGAGTTAGATGAATTAGATCCTCAAATATCCTTGGAACAGTTTCTTGTACATCAAGACAAACCAAAGGTTCTTATGAGAGATGACCCTCAAGAAAAACTAGATGCAAAACAGAAGATAAAACCAGATATGGAGATTTATAGAAGATTGGATGATACATATTTCACTCTAAAGAAGACTCTGTTGGATGGATCCCTTGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCTAAAACTCCATCTACTTTTAGTGCTTATTGGGGTACAGTTGAAAGTGAAAATGATGGTGACAATGCAACAATTCCTTCCCAAGTGCACCTGGATACCTATGCACTGGATCCATCTGTTTCCCATGATCAACTTTTTACTATTATTGACTTTTCCCCAAGCTGGACATTTGAAGGCTCAGAAACTAAGATTCTCATTTATGGACAATTCTTGAGGAGTCTACAGGAAGCAGAACAATGTAAATGGTCTTGTATGTTTGGTGAGGTAGAAGTGCCAGCTCAGATCATTGACAATGGTGTTCTTTCTTGTTATACTCCTCCACACAAAAGTGGGAGGGTTCCTTTCTATGTGACTTGTTCCAATAGGTTAGCATGTAGTGAAATACGAGAGTTTGAATTCCGAGACAATTACACCCAAGAAGTCAACAATGCAGCTGAGCAGAGAGAGAGCATGTTTTATACTTTCAGTGTGCGATTTGGAGAGCTACTGTACTTGGGGCACGCCTTACCTCAAGACTTAGACCCAATTTGTGCAAGTGAGAAATCTGAACTGAGAAGTAAAATCAGTTCTTTGCTGAGGGCAGAGGATGATGATTGGGATAAGCTGCTGAAACTCACTCTTGAGAAAGATTTTTCTCCGGAAAATGTACAGGAAAAGCTGCTTCAAAATCTTTTGAAAGATAAGTTACTTGCATGGCTCCTTCAAAAAGTCATGGAAGATGGGAAAGGCCCTAATGTATTGGATGAGGGTGGCCAAGGAGTACTTCATCTTGCGGCTGCTCTTGGCTATGATTGGGCCTTACTACCCACAGTAGTTGCCGGCGTAAATGTGAACTTCCGCGATGTAAATGGATGGACTGCTCTTCATTGGGCTGCATTTTGTGGCAGGGAGCTCACAGTTGCTTCTCTCATCTCTCTTGGCGCTGCACCTGGAGCACTGACTGATCCAAGCCCAGAACATCCTTCTGGTAGAACACCAGCTGACCTGGCTTCTGCTAATGGTCACAAAGGAATTGCAGGCTATCTTGCAGAATCTTCAATAAGCGTGCAACTGTTATCTATTGATTTGAACAGGGACAAGACAGAAAATTCTGGGTCAAAAGTAGTACAAAGAGTTCAACACAATACTGCTGAAGTTAATGATGATCGCCTATCATATGAACTGTCACTGAAAGATTCATTGGCAGCAGTGTGTAATGCCAGCCAGGCTGCTGCTCGTATTCATGAAGTTTATAGAGTGCAGTCTTTCCAGAGAAAACAACTGAAAGAATATGGTGATGATAAATTTGGAATATCTAATGAAGATGCTCTTTCCCTTATAACTGTAAAACTACACAAGAATGGACAACGCAATGAGCCTGTACATGAAGCTGCAATACGAATCCAGAATAAATTCCGCAGTTGGAAGGGCAGAAAAGAATTTTTGATGATTCGGCAAAGAATAGTTAAAATTCAGGCTCATGTAAGGGGGCACCAGGTTAGGAAGAACTATGGAAACATTATTTGGTCAGTTGGAATTTTGGAAAAGGTTATTTTGCGGTGGCGCCGAAAAGGTAGTGGTTTGCGTGGATTTAGATCAGAAGCTGTTCCTGAGGGGACTATGATACAAGATACAGAGTGCAAGGAAGATGAGTATGATTTCTTGAAAGAAGGCAGAAAGCAAACAGAGGAAAGGTTGCAGAAAGCCCTATCAAGGGTGAAGTCAATGGTTCAGTATCCAGANNNNNNNNNNTCATAG 2880 0.4149 MFQIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWMLEEELSHIVLVHYREVKATKANFRGAAKENQESLPYAQVDKLPGPTAKEISSSCSLDPHNYQVPSQQTIDATSMNSTQATKYEEAESEDYSFLETQHPVVQKIPDPYCPLLFVNEQEKLCGTPGMNHTKLSQASKIKDIHNIRLAYEPPQHLGFSMWEYVLENNGRSQYLPFQPVLPEIQTGNMGINSNPSLRDEIMRQKNIVQVEGHWQVMDELDELDPQISLEQFLVHQDKPKVLMRDDPQEKLDAKQKIKPDMEIYRRLDDTYFTLKKTLLDGSLAEEGLKKLDSFNQWMSKELGDVEESKTPSTFSAYWGTVESENDGDNATIPSQVHLDTYALDPSVSHDQLFTIIDFSPSWTFEGSETKILIYGQFLRSLQEAEQCKWSCMFGEVEVPAQIIDNGVLSCYTPPHKSGRVPFYVTCSNRLACSEIREFEFRDNYTQEVNNAAEQRESMFYTFSVRFGELLYLGHALPQDLDPICASEKSELRSKISSLLRAEDDDWDKLLKLTLEKDFSPENVQEKLLQNLLKDKLLAWLLQKVMEDGKGPNVLDEGGQGVLHLAAALGYDWALLPTVVAGVNVNFRDVNGWTALHWAAFCGRELTVASLISLGAAPGALTDPSPEHPSGRTPADLASANGHKGIAGYLAESSISVQLLSIDLNRDKTENSGSKVVQRVQHNTAEVNDDRLSYELSLKDSLAAVCNASQAAARIHEVYRVQSFQRKQLKEYGDDKFGISNEDALSLITVKLHKNGQRNEPVHEAAIRIQNKFRSWKGRKEFLMIRQRIVKIQAHVRGHQVRKNYGNIIWSVGILEKVILRWRRKGSGLRGFRSEAVPEGTMIQDTECKEDEYDFLKEGRKQTEERLQKALSRVKSMVQYPXXXXS 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60440g00016 959 ProSiteProfiles Ankyrin repeat profile. 664 696 IPR002110 GO:0005515
Stsc60440g00016 959 ProSiteProfiles CG-1 DNA-binding domain profile. 1 101 IPR005559 GO:0003677
Stsc60440g00016 959 SMART iq_5 857 879 IPR000048 GO:0005515
Stsc60440g00016 959 SMART iq_5 834 856 IPR000048 GO:0005515
Stsc60440g00016 959 Pfam Ankyrin repeats (3 copies) 636 730 IPR002110 GO:0005515
Stsc60440g00016 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 829 884 IPR027417 -
Stsc60440g00016 959 SUPERFAMILY Ankyrin repeat 616 727 IPR036770 -
Stsc60440g00016 959 ProSiteProfiles IQ motif profile. 858 882 IPR000048 GO:0005515
Stsc60440g00016 959 ProSiteProfiles IQ motif profile. 836 864 IPR000048 GO:0005515
Stsc60440g00016 959 SUPERFAMILY E set domains 428 515 IPR014756 -
Stsc60440g00016 959 Coils Coil 926 946 - -
Stsc60440g00016 959 FunFam Calmodulin-binding transcription activator 2 834 882 - -
Stsc60440g00016 959 Pfam CG-1 domain 2 94 IPR005559 GO:0003677
Stsc60440g00016 959 Gene3D - 590 735 IPR036770 -
Stsc60440g00016 959 SMART ANK_2a 703 732 IPR002110 GO:0005515
Stsc60440g00016 959 SMART ANK_2a 664 693 IPR002110 GO:0005515
Stsc60440g00016 959 Gene3D Immunoglobulins 422 518 IPR013783 -
Stsc60440g00016 959 SMART CG_1_2 1 96 IPR005559 GO:0003677
Stsc60440g00016 959 Pfam IQ calmodulin-binding motif 836 855 IPR000048 GO:0005515
Stsc60440g00016 959 Pfam IQ calmodulin-binding motif 860 878 IPR000048 GO:0005515
Stsc60440g00016 959 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 955 - -
Stsc60440g00016 959 FunFam Calmodulin-binding transcription activator 2 422 519 - -
Stsc60440g00016 959 Pfam IPT/TIG domain 428 507 IPR002909 -
Stsc60440g00016 959 MobiDBLite consensus disorder prediction 692 711 - -
Stsc60440g00016 959 Gene3D - 833 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60440g00016 Stsc-Chr60440 75241 81331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60440g00016 19 954 CAMTA Transcription Factor Family AT2G22300 48.710 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Stsc60440g00016 Ank_2 9.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60440g00016 K21596 - gmx:100798875 1339.32