Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60440g00015 ATGAAGATATCATCAGTTAATTATCGAACTTTTATGAAACTTCAAACCAAATTCTTTAAGGACAATGCCCCAAATAATGTTCCACCAGGAACTGTTGTTGACACCCAAATCTTGATCCCAAGAACAATGACTTTTACATGTGTGCTTTGCTCAGGCTGGAACAATGACTTTTACATGTGTGCTTTGCTCAGTTACCAGAGGAGCACCACTGCCATATCAATAGGTATTGAGCAAATTCTTATTGAAGCGCAGCATCGATGGCTGCGTCCAGCTGAAATTTGTGAAATTCTCAGTAATTATAAAATGTTCCAAATTGCTCCAGAGCCTGCACATATGCCACCAAGCGGTTCACTTTTCCTGTTTGATCGGAAGGTGCTGAGATACTTTAGAAAAGATGGTCACAACTGGAGAAAGAAAAAGGATGGGAAAACAGTGAGGGAAGCTCATGAGAGACTCAAGGCTGGAAGTGTGGATGTGTTGCACTGCTACTATGCACATGGAGAAGAAAATGAAAATTTTCAAAGACGCACATATTGGATGCTCGAAGAGGAACTCTCACACATTGTTCTTGTCCATTATAGGGAAGTGAAGGCAACTAAGGCAAATTTTAGAGGTGCTGCCAAAGAAAACCAAGAATCTCTTCCCTATGCACAAGTTGACAAACTACCAGGTCCCACAGCGAAGGAAATTTCTTCATCATGTAGTCTTGATCCACATAACTACCAGGTTCCATCACAACAAACTATAGATGCAACAAGCATGAACAGCACTCAAGCAACAAAATATGAAGAAGCTGAGTCAGCATTGAATAATTATGCAAGTTCAGAAGACTATTCCTTCCTTGAGACACAACACCCAGTTGTCCAGAAGATTCCTGATCCTTATTGCCCGCTGCTGTTCGTAAATGAACAAGAGAAGTTGTGTGGCACTCCTGGGATGAATCATACCAAGCTCAGTCAAGCTTCCAAAATCAAAGACATTCATAATATTAGATTGGCATATGAACCCCCGCAACACCTTGGCTTTTCAATGTGGGAATATGTCTTGGAAAATAATGGGAGAAGTCAATACTTGCCTTTTCAACCTGTACTCCCTGAAATCCAAACTGGTAACATGGGAATCAATAGCAATCCCTCTCTGAGGGATGAGATAATGAGGCAAAAAAATATTGTACAAGTTGAAGGACATTGGCAGGTAATGGATGAGTTAGATGAATTAGATCCTCAAATATCCTTGGAACAGTTTCTTGTACATCAAGACAAACCAAAGGTTCTTATGAGAGATGACCCTCAAGAAAAACTAGATGCAAAACAGAAGATAAAACCAGATATGGAGATTTATAGAAGATTGGATGATACATATTTCACTCTAAAGAAGACTCTGTTGGATGGATCCCTTGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCTAAAACTCCATCTACTTTTAGTGCTTATTGGGGTACAGTTGAAAGTGAAAATGATGGTGACAATGCAACAATTCCTTCCCAAGTGCACCTGGATACCTATGCACTGGATCCATCTGTTTCCCATGATCAACTTTTTACTATTATTGACTTTTCCCCAAGCTGGACATTTGAAGGCTCAGAAACTAAGATTCTCATTTATGGACAATTCTTGAGGAGTCTACAGGAAGCAGAACAATGTAAATGGTCTTGTATGTTTGGTGAGGTAGAAGTGCCAGCTCAGATCATTGACAATGGTGTTCTTTCTTGTTATACTCCTCCACACAAAAGTGGGAGGGTTCCTTTCTATGTGACTTGTTCCAATAGGTTAGCATGTAGTGAAATACGAGAGTTTGAATTCCGAGACAATTACACCCAAGAAGTCAACAATGCAGCTGAGCAGAGAGAGAGCATGTTTTATACTTTCAGTGTGCGATTTGGAGAGCTACTGTACTTGGGGCACGCCTTACCTCAAGACTTAGACCCAATTTGTGCAAGTGAGAAATCTGAACTGAGAAGTAAAATCAGTTCTTTGCTGAGGGCAGAGGATGATGATTGGGATAAGCTGCTGAAACTCACTCTTGAGAAAGATTTTTCTCCGGAAAATGTACAGGAAAAGCTGCTTCAAAATCTTTTGAAAGATAAGTTACTTGCATGGCTCCTTCAAAAAGTCATGGAAGATGGGAAAGGCCCTAATGTATTGGATGAGGGTGGCCAAGGAGTACTTCATCTTGCGGCTGCTCTTGGCTATGATTGGGCCTTACTACCCACAGTAGTTGCCGGCGTAAATGTGAACTTCCGCGATGTAAATGGATGGACTGCTCTTCATTGGGCTGCATTTTGTGGCAGGGAGCTCACAGTTGCTTCTCTCATCTCTCTTGGCGCTGCACCTGGAGCACTGACTGATCCAAGCCCAGAACATCCTTCTGGTAGAACACCAGCTGACCTGGCTTCTGCTAATGGTCACAAAGGAATTGCAGGCTATCTTGCAGAATCTTCAATAAGCGTGCAACTGTTATCTATTGATTTGAACAGGGACAAGACAGAAAATTCTGGGTCAAAAGTAGTACAAAGAGTTCAACACAATACTGCTGAAGTTAATGATGATCGCCTATCATATGAACTGTCACTGAAAGATTCATTGGCAGCAGTGTGTAATGCCAGCCAGGCTGCTGCTCGTATTCATGAAGTTTATAGAGTGCAGTCTTTCCAGAGAAAACAACTGAAAGAATATGGTGATGATAAATTTGGAATATCTAATGAAGATGCTCTTTCCCTTATAACTGTAAAACTACACAAGAATGGACAACGCAATGAGCCTGTACATGAAGCTGCAATACGAATCCAGAATAAATTCCGCAGTTGGAAGGGCAGAAAAGAATTTTTGATGATTCGGCAAAGAATAGTTAAAATTCAGGCTCATGTAAGGGGGCACCAGGTTAGGAAGAACTATGGAAACATTATTTGGTCAGTTGGAATTTTGGAAAAGGTTATTTTGCGGTGGCGCCGAAAAGGTAGTGGTTTGCGTGGATTTAGATCAGAAGCTGTTCCTGAGGGGACTATGATACAAGATACAGAGTGCAAGGAAGATGAGTATGATTTCTTGAAAGAAGGCAGAAAGCAAACAGAGGAAAGGTTGCAGAAAGCCCTATCAAGGGTGAAGTCAATGGTTCAGTATCCAGANNNNNNNNNNTCATAG 3207 0.411 MKISSVNYRTFMKLQTKFFKDNAPNNVPPGTVVDTQILIPRTMTFTCVLCSGWNNDFYMCALLSYQRSTTAISIGIEQILIEAQHRWLRPAEICEILSNYKMFQIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWMLEEELSHIVLVHYREVKATKANFRGAAKENQESLPYAQVDKLPGPTAKEISSSCSLDPHNYQVPSQQTIDATSMNSTQATKYEEAESALNNYASSEDYSFLETQHPVVQKIPDPYCPLLFVNEQEKLCGTPGMNHTKLSQASKIKDIHNIRLAYEPPQHLGFSMWEYVLENNGRSQYLPFQPVLPEIQTGNMGINSNPSLRDEIMRQKNIVQVEGHWQVMDELDELDPQISLEQFLVHQDKPKVLMRDDPQEKLDAKQKIKPDMEIYRRLDDTYFTLKKTLLDGSLAEEGLKKLDSFNQWMSKELGDVEESKTPSTFSAYWGTVESENDGDNATIPSQVHLDTYALDPSVSHDQLFTIIDFSPSWTFEGSETKILIYGQFLRSLQEAEQCKWSCMFGEVEVPAQIIDNGVLSCYTPPHKSGRVPFYVTCSNRLACSEIREFEFRDNYTQEVNNAAEQRESMFYTFSVRFGELLYLGHALPQDLDPICASEKSELRSKISSLLRAEDDDWDKLLKLTLEKDFSPENVQEKLLQNLLKDKLLAWLLQKVMEDGKGPNVLDEGGQGVLHLAAALGYDWALLPTVVAGVNVNFRDVNGWTALHWAAFCGRELTVASLISLGAAPGALTDPSPEHPSGRTPADLASANGHKGIAGYLAESSISVQLLSIDLNRDKTENSGSKVVQRVQHNTAEVNDDRLSYELSLKDSLAAVCNASQAAARIHEVYRVQSFQRKQLKEYGDDKFGISNEDALSLITVKLHKNGQRNEPVHEAAIRIQNKFRSWKGRKEFLMIRQRIVKIQAHVRGHQVRKNYGNIIWSVGILEKVILRWRRKGSGLRGFRSEAVPEGTMIQDTECKEDEYDFLKEGRKQTEERLQKALSRVKSMVQYPXXXXS 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60440g00015 1068 SUPERFAMILY E set domains 537 624 IPR014756 -
Stsc60440g00015 1068 FunFam Calmodulin-binding transcription activator 2 943 991 - -
Stsc60440g00015 1068 MobiDBLite consensus disorder prediction 801 820 - -
Stsc60440g00015 1068 FunFam Calmodulin-binding transcription activator 2 531 628 - -
Stsc60440g00015 1068 SMART iq_5 943 965 IPR000048 GO:0005515
Stsc60440g00015 1068 SMART iq_5 966 988 IPR000048 GO:0005515
Stsc60440g00015 1068 Coils Coil 1035 1055 - -
Stsc60440g00015 1068 ProSiteProfiles CG-1 DNA-binding domain profile. 76 202 IPR005559 GO:0003677
Stsc60440g00015 1068 Pfam IPT/TIG domain 537 616 IPR002909 -
Stsc60440g00015 1068 Gene3D - 699 844 IPR036770 -
Stsc60440g00015 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 993 IPR027417 -
Stsc60440g00015 1068 SUPERFAMILY Ankyrin repeat 725 836 IPR036770 -
Stsc60440g00015 1068 SMART CG_1_2 79 197 IPR005559 GO:0003677
Stsc60440g00015 1068 Pfam CG-1 domain 82 195 IPR005559 GO:0003677
Stsc60440g00015 1068 SMART ANK_2a 773 802 IPR002110 GO:0005515
Stsc60440g00015 1068 SMART ANK_2a 812 841 IPR002110 GO:0005515
Stsc60440g00015 1068 Pfam Ankyrin repeats (3 copies) 745 839 IPR002110 GO:0005515
Stsc60440g00015 1068 Gene3D - 942 990 - -
Stsc60440g00015 1068 Gene3D Immunoglobulins 531 627 IPR013783 -
Stsc60440g00015 1068 ProSiteProfiles Ankyrin repeat profile. 773 805 IPR002110 GO:0005515
Stsc60440g00015 1068 Pfam IQ calmodulin-binding motif 945 964 IPR000048 GO:0005515
Stsc60440g00015 1068 Pfam IQ calmodulin-binding motif 969 987 IPR000048 GO:0005515
Stsc60440g00015 1068 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 76 1064 - -
Stsc60440g00015 1068 ProSiteProfiles IQ motif profile. 967 991 IPR000048 GO:0005515
Stsc60440g00015 1068 ProSiteProfiles IQ motif profile. 945 973 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60440g00015 Stsc-Chr60440 72835 81331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60440g00015 120 1063 CAMTA Transcription Factor Family AT2G22300 49.123 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Stsc60440g00015 CG-1 1.1e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60440g00015 K21596 - gmx:100798875 1403.65