Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00050 ATGGGTGAGGAGTTTGAAGCAGCGATTTGTGGTGATAACTATTGGTGGAACTCATCAACTACAAGAAGCAGCTTGTTCCCTTTCATGGCTGGATCCATGACTTGCTCCGTTGCAGCTGCTGCTAATGATTCTGCTTCCTGCTGGCAACTTTCTGATTTCATGGATTTCAATAATAAGGGACCAACAACAACAACAAGGTCTTCTTCTTCTCATGAAGAACAAGATACTAACAACAACAACAAGTGTGGTAATAATAATAATAATGAATCATCAACATCAGCAGCAGCAAGTGGGAGCATCTTCATGGATTCCACCTTACAAATGATGGCTTATGGCCTCTCATCTTCACCACCATCATCCACCACTTGTTGGAATAATAATCCCTCTCTTTTTGGTTGTAATGAAAGATCAGAGAACAACAACTTCCAATCTGTTATGCTTGAAGAAGAAAGGGGATTAGTAGATTCTTCTAATAGCAACAGCAACAAAGAGTTTCAGTTGATGAGTTGTGTGAGCAGTGGATTCCAAATAGGATCATCATCATCTTATGGTTACCCTTCTTCAACCATGATTCATGAAGGAGGGCTATTTGACCCAACCGATTCATCATCATCAATTTTCACACCTCCTCAACTCTCACCAACATGGTCTACTGTCTCTTCTCTTATGGACCCAAAGCAGCAGCAGCAAATTAATAACAATGGATTGCAATTCTCAAACAATACTACTACTCCTTTCTGGAATAATAATGCTTCTTCTTCGCCTCATCATGACATAATAACATCTGCTGTCTTTTCTTCACCTTCATCATCACAGCCACACCAATATCAAACACCACCACCACCTAACAAACCCGTTAATGCTCCAACTAGTACTCCACTCAACAAGCTGAAGAGAGAAGAATCTCCGGAGAAGGCATCATCAGGTGGGAGCAGCAAAAGTGCTTCTGAACGCGCCTTCAAGAGGACAAGAATTGAAACTCCATCTCCATTGCCTACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGATCACTGCTCTTCAGCAATTGGTATCACCTTTCGGAAAGACGGACACTGCATCCGTTCTCCACGAAGCCATTGAGTACATCAAGTTCCTTCACGATCAAGTCAATGTTTTAACCACTCCATACATGAAAAATGGAGCTCCAATAATTCAACACCAACAGGGATGTGATAATGGAAAGGATTCAGGAGGTGCAAAACAAGATTTGAGAAGCCGAGGGCTTTGTTTGGTACCGGTTGCAAGCACATTTCCGATGGCTACCGAGACCACTGCCGATTTTTGGACGCCTACATTCGGAGGCGCGCTGATCGGCAGTGGTAGATAG 1353 0.4294 MGEEFEAAICGDNYWWNSSTTRSSLFPFMAGSMTCSVAAAANDSASCWQLSDFMDFNNKGPTTTTRSSSSHEEQDTNNNNKCGNNNNNESSTSAAASGSIFMDSTLQMMAYGLSSSPPSSTTCWNNNPSLFGCNERSENNNFQSVMLEEERGLVDSSNSNSNKEFQLMSCVSSGFQIGSSSSYGYPSSTMIHEGGLFDPTDSSSSIFTPPQLSPTWSTVSSLMDPKQQQQINNNGLQFSNNTTTPFWNNNASSSPHHDIITSAVFSSPSSSQPHQYQTPPPPNKPVNAPTSTPLNKLKREESPEKASSGGSSKSASERAFKRTRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLTTPYMKNGAPIIQHQQGCDNGKDSGGAKQDLRSRGLCLVPVASTFPMATETTADFWTPTFGGALIGSGR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00050 450 FunFam Transcription factor bHLH123 family 335 398 - -
Stsc60439g00050 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Stsc60439g00050 450 MobiDBLite consensus disorder prediction 233 273 - -
Stsc60439g00050 450 Gene3D - 335 388 IPR036638 GO:0046983
Stsc60439g00050 450 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 116 426 - -
Stsc60439g00050 450 MobiDBLite consensus disorder prediction 59 94 - -
Stsc60439g00050 450 MobiDBLite consensus disorder prediction 274 288 - -
Stsc60439g00050 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 388 IPR036638 GO:0046983
Stsc60439g00050 450 MobiDBLite consensus disorder prediction 233 327 - -
Stsc60439g00050 450 CDD bHLH_AtbHLH_like 331 381 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00050 Stsc-Chr60439 205894 208692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00050 1 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 35.821 7.46e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00050 - - adu:107468661 439.499