Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00047 ATGGCGGGTGAGCTACCAGAACACTTCAAGTGTCCGATTTCACTGGAAATAATGTCGGACCCAGTCATACTCTCCTCCGGCCACACCTTCGACCGATCCTCCATTCAGCGCTGGCTCGACTCTGGCCACCGCACTTGCCCAATTACCAAACTACCCCTCCCCGATCATCCCATCCTCATCCCCAACCACGCCCTCCGCAGCCTCATTTCCAACTTTACCCCTCTCTCTCCAACTCCAATTCCCAATCCCACACCCTCCCACTCCCAACCCCAAACCCTAATCTCTACTCTCACCTCCCAAGCTTCCTCTTCTTCCTCCAAGCTCGACTCGCTCCAGCAACTCACCCGACTCGCCAACCGTGACTCGCTCTTCCGCCGCCGTCTCACCGATTCCGGAATCGTCCCGCCGCTACTCTCCTGCGTCGACTCCGACGACCACGACCACGATTCCCTCCGAGATAAGGCTCTCTCGTTGCTTCTCAATCTCAGCCTCGACGACCACAACAAGGTTGGACTCGTCGCCGAGGGAGTCGTTTCCCGCCTCGTCGCCATCATCTCCGGCACCGCTGCTGGAACTCCGTCCCCGGACTGCCGCGCCATCGCAGCCACCACACTCACAAGCCTCGCCGTTGTGGAGGTCAACAAGGCCACAATCGGCGCGTACCCTCACGCGATCGAGTCACTCGTGTCACTCGTGAGGGACGGAAAGGGGAGAGAGAAGAAGGAAGCCGCGACGGCGCTCTATGCTCTCTGCTCCTTCCCGGACAACAGGCGGAGGGCGGTGGAATGCGGCGCGGTGCCTGTTCTTCTCCGGAGCGTGGATTGCGGTTTGGAGAGGGCCGTTGAGGTTCTCGGGGTTCTTGCCAAGTGTAAGGAAGGGAGGGAGCAGATGGAGAGGTTCCATGGATGCGTTCAGATTCTGAGCCGGGTACTGAGGAATGGAAGCTCGAGAGGGGTTCAGTATGCTCTCTTGGCTCTTAACTCTTTGTGTTGTGGCAGTGAAGTTGCTTCCACGGATGCCATCAGAGAAGGCCTCTTGGAAACGTGTCTTGCCTTTCTTGAAGATGATAACGAGAAAGTCAGAAGGAATGCTTCCGCTTTGCTTCAGAATCTGCGTGGCAACAATAGGATCAGCTGA 1137 0.577 MAGELPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDSGHRTCPITKLPLPDHPILIPNHALRSLISNFTPLSPTPIPNPTPSHSQPQTLISTLTSQASSSSSKLDSLQQLTRLANRDSLFRRRLTDSGIVPPLLSCVDSDDHDHDSLRDKALSLLLNLSLDDHNKVGLVAEGVVSRLVAIISGTAAGTPSPDCRAIAATTLTSLAVVEVNKATIGAYPHAIESLVSLVRDGKGREKKEAATALYALCSFPDNRRRAVECGAVPVLLRSVDCGLERAVEVLGVLAKCKEGREQMERFHGCVQILSRVLRNGSSRGVQYALLALNSLCCGSEVASTDAIREGLLETCLAFLEDDNEKVRRNASALLQNLRGNNRIS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00047 378 PANTHER U BOX DOMAIN-CONTAINING 6 369 - -
Stsc60439g00047 378 SUPERFAMILY ARM repeat 92 371 IPR016024 -
Stsc60439g00047 378 Gene3D - 276 377 IPR011989 -
Stsc60439g00047 378 Gene3D - 89 275 IPR011989 -
Stsc60439g00047 378 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Stsc60439g00047 378 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Stsc60439g00047 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Stsc60439g00047 378 CDD RING-Ubox_PUB 6 55 IPR045210 -
Stsc60439g00047 378 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Stsc60439g00047 378 Coils Coil 350 370 - -
Stsc60439g00047 378 SMART arm_5 214 252 IPR000225 GO:0005515
Stsc60439g00047 378 SMART arm_5 121 164 IPR000225 GO:0005515
Stsc60439g00047 378 SMART arm_5 165 210 IPR000225 GO:0005515
Stsc60439g00047 378 SMART arm_5 290 331 IPR000225 GO:0005515
Stsc60439g00047 378 SMART arm_5 332 373 IPR000225 GO:0005515
Stsc60439g00047 378 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Stsc60439g00047 378 SUPERFAMILY RING/U-box 3 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00047 Stsc-Chr60439 197773 199563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00047 1 373 U-box Gene Family AT4G21350 60.477 6.95e-151 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00047 - - pcin:129286672 476.478