Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00046 ATGGAGAGAAGAAGAAGAAGAACACACTTGAGCCTTTCATTTCTTGCCACTTGTTACTTCTTCTTCTTCTTCATTGCCATTTTTGCAACACTTCTGGAAGCATATGATAGCATGAGTCCACCACAAACCATCACTGCCAACAAAACACTAGTCTCACCTTCCCACAATTTTGAACTAGGTTTCTTCAATCTTGGTAGCAACAGATATCTTGGGATATGGTACAAGAATGTTCCTAAGAAAACTCTTATTTGGATTGCAAATAGAAACACTCCACTACTTGTTCATGATGATGGATCCTTAACATTCAGCAATGATGGGAAGCTCATAGTTCTCAGCAACAAAGGAAGTGTTATATGGTCTTCAAATTCTTCTAGACCTGCAAGGAATCCAGTGGCACAGCTTCTAGACACAGGAAACCTTGTTCTGAAGGATGTTATTGATGGAACAAGCTCTGAGGAATATATATGGCAGAGTTTTGATTATCCATGTGACACATTGGTGCCAGGGATGAGACTTGGTTGGAGATTCAAAACCGGCTTGAACCGCCATTTGAGTTCTTGGAAAAGCTATGATGATCCTTCTAATGGAGATTACACCTACAGTGTTGACCCTCGTGGAATTCCTCAGCTTTTTCTTTACAAGAGGAACAAGAAAATCTTCAGAAGTGGACCATGGTATGGACAACAATTCAAAGGTGATCCAGTTCTCAGTTCAAATCCGGTTTTCAAACCAGTATTTGTTTTCAATTCTGATGAAGTTTCTTACTCATATGAGGCTAAGGACAACATGATCTCAAGATTTGTGCTTACGCCGTCCGGTTCCATTCGCCATTTCTCCTGGAATGATCACAAGTCAAGCTGGGTTTCTGAGTTCTCAGTCCAAGGGGACCATTGTGATGATTATGCTCTTTGTGGTGCTTATGGCAGTTGCAGCATTGTTAAGAGCTCTTCCCCTAGTTGCAAGTGTTTGAAGGGTTTTGAGCCTAGAAAAGCTACTCAAGATTGGTCAAGTGGATGTGTGAGGGAGGATTCAAAGGGTTGCAGAAGTGGAGGAGACAAATTTGAGAAGCTTACAGGGTTGAAGCTACCAGATTCTGCAGAGTTTCATGCAAACTACAGCATTAGTATTAATCACTGTGAAGCAGAATGCTTGAAGAATTGTTCTTGTGTAGCTTATGCTAAACTAGATGTGAATGCAAGTGGCAAAGGATGTGTTACTTGGTTTGGAGATTTGTTTGATGTTAGAGAGGTTCCTGTGTATGGTCAAGATCTCTATGTCAGAGTTTCAGCTTCACAACTAGATTCAAATGCTTCTAGAAACAAAAAGAAGAAATTCATACTGCTTCCTGTTGCTGTATCCTTAACTTCAGCAATTGTTGTTTTAGCATTGTGGTTCATAACTAAGATATGGCAAAGAAATGGAGTTGGTAAAGGGGACCTTCAATTTAGTGATGGAAGAGGTAGTAGGAGTGAGAGGAATGAATATGAACTCCCATTATTTGAGATTGCCATCATTGAAGCTGCAACTATGAATTTCTCTGGTGAACTTCCATCAGGACAAGAAATAGCAGTGAAGAAACTCTTGGAGAGTTCTGGACAAGGTCTAGAGGAGTTTAAGAATGAGGTGATTTTGATCTCCCAACTTCAGCATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCATGGAGAAGACAAAATGTTGGTCTATGAATACATGCCAAACAAAAGCTTAGACTCATTATTATTTGATGAAACCAAGCGTTCTGTCCTCAATTGGCAAAAGAGGCTGGACATTATCATTGGTATTGCAAGAGGGCTTCTCTACCTTCATAGAGATTCAAGGTTAAGAATAGTCCATAGAGATCTAAAAGCAAGCAATGTTCTTCTAGACACTGAAATGAATCCGAAGATTTCCGATTTCGGAATGGCTAGAATGTTTGGTGGAGATCAAACTGAAGCAATGACCAAGAGAGTGGTTGGAACCTATGGATATATGTCACCAGAGTATGCAATAGATGGTCAATTCTCTTTCAAATCAGATGTATTCAGCTTTGGTGTTCTATTGCTAGAGATATTGAGTGGCAAGAAAAACAAAGGATTCTTGCACCCAGATCACAAACTCAATCTTCTAGGCCATGCATGGAAGCTTTGGAATGAAGGTAAAGCATTGGAACTGATGGATGGTTTACTTGAGAATGAGTTTCCTACCAATGAAGCTGTAAGGTGTATACAAGTGGGATTGTCATGTGTTCAACACCACCCAGAAGACAGGCCAACAATGTCACAAGTTCTTGTGATGTTGGACAGTGAGAGTGCAGTGCTGCCACAACCTGGAAGACCAGGATTATATTCAGAGAGATTTTTCTCGGAGACAGATTCAACTTCACTTGCTAGACTCAACACTAGTTCTAATCACATCACTGTCACCTTAATAGAGGCTCGTTAA 2448 0.4032 MERRRRRTHLSLSFLATCYFFFFFIAIFATLLEAYDSMSPPQTITANKTLVSPSHNFELGFFNLGSNRYLGIWYKNVPKKTLIWIANRNTPLLVHDDGSLTFSNDGKLIVLSNKGSVIWSSNSSRPARNPVAQLLDTGNLVLKDVIDGTSSEEYIWQSFDYPCDTLVPGMRLGWRFKTGLNRHLSSWKSYDDPSNGDYTYSVDPRGIPQLFLYKRNKKIFRSGPWYGQQFKGDPVLSSNPVFKPVFVFNSDEVSYSYEAKDNMISRFVLTPSGSIRHFSWNDHKSSWVSEFSVQGDHCDDYALCGAYGSCSIVKSSSPSCKCLKGFEPRKATQDWSSGCVREDSKGCRSGGDKFEKLTGLKLPDSAEFHANYSISINHCEAECLKNCSCVAYAKLDVNASGKGCVTWFGDLFDVREVPVYGQDLYVRVSASQLDSNASRNKKKKFILLPVAVSLTSAIVVLALWFITKIWQRNGVGKGDLQFSDGRGSRSERNEYELPLFEIAIIEAATMNFSGELPSGQEIAVKKLLESSGQGLEEFKNEVILISQLQHRNLVKLLGCCIHGEDKMLVYEYMPNKSLDSLLFDETKRSVLNWQKRLDIIIGIARGLLYLHRDSRLRIVHRDLKASNVLLDTEMNPKISDFGMARMFGGDQTEAMTKRVVGTYGYMSPEYAIDGQFSFKSDVFSFGVLLLEILSGKKNKGFLHPDHKLNLLGHAWKLWNEGKALELMDGLLENEFPTNEAVRCIQVGLSCVQHHPEDRPTMSQVLVMLDSESAVLPQPGRPGLYSERFFSETDSTSLARLNTSSNHITVTLIEAR 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00046 815 Gene3D - 30 159 IPR036426 -
Stsc60439g00046 815 Pfam PAN-like domain 347 414 IPR003609 -
Stsc60439g00046 815 ProSiteProfiles Protein kinase domain profile. 478 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00046 815 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 759 - -
Stsc60439g00046 815 FunFam Receptor-like serine/threonine-protein kinase SD1-8 30 159 - -
Stsc60439g00046 815 ProSiteProfiles Bulb-type lectin domain profile. 35 155 IPR001480 -
Stsc60439g00046 815 Pfam S-locus glycoprotein domain 220 329 IPR000858 GO:0048544
Stsc60439g00046 815 ProSiteProfiles EGF-like domain profile. 294 332 IPR000742 -
Stsc60439g00046 815 Pfam Domain of unknown function (DUF3403) 770 815 IPR021820 GO:0004674
Stsc60439g00046 815 FunFam Uncharacterized protein 505 572 - -
Stsc60439g00046 815 CDD B_lectin 42 162 IPR001480 -
Stsc60439g00046 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 573 776 - -
Stsc60439g00046 815 CDD STKc_IRAK 514 769 - -
Stsc60439g00046 815 SUPERFAMILY Protein kinase-like (PK-like) 517 784 IPR011009 -
Stsc60439g00046 815 SMART ntp_6 349 428 IPR003609 -
Stsc60439g00046 815 ProSiteProfiles PAN/Apple domain profile. 347 429 IPR003609 -
Stsc60439g00046 815 SMART blect_4 41 162 IPR001480 -
Stsc60439g00046 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 193 IPR036426 -
Stsc60439g00046 815 Gene3D Phosphorylase Kinase; domain 1 488 572 - -
Stsc60439g00046 815 Pfam D-mannose binding lectin 81 188 IPR001480 -
Stsc60439g00046 815 SMART serkin_6 500 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00046 815 PIRSF SRK 7 815 IPR024171 GO:0004674
Stsc60439g00046 815 Pfam Protein tyrosine and serine/threonine kinase 518 766 IPR001245 GO:0004672|GO:0006468
Stsc60439g00046 815 CDD PAN_AP_plant 347 429 - -
Stsc60439g00046 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Stsc60439g00046 815 Gene3D Transferase(Phosphotransferase) domain 1 573 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00046 Stsc-Chr60439 189322 193050 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00046 428 783 Receptor kinase-like Gene Family AT4G05200 49.867 2.01e-117 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60439g00046 PK_Tyr_Ser-Thr 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00046 - - gmx:100804024 1213.36