Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00045 ATGCCAACCTCATTCACTCATTCCCTTAACCACCTCCTCACCATTCCCTTCTTCCTCTTCTTCTTCATCACTTCATCAACCTCTTCCGATACATTAACCGCAACACAAGCTCTCAGAACCAACCAGACTCTACTCTCACAAAACCAAACCTTCGTTCTAGGCTTCTTCAGAGGCTCCAACACCAACTACTACCTCGGAATTTGGTACAACAACATCACTCCTCAAACAATAGTTTGGGTTGCAAACAGAGACAATCCCATTGACAACTCCACCGGCTATCTCAAGATCGGAGACGACGGAAACTTCCTCCTCCTCAATTCATCCGGTAAAACAGCATGGTCCTCCAACGCAACCACCGCCAAGACTCCAATTCTCCAGCTCCTCGAAACCGGTAACCTTGTTCTCCAAGATTCAGACCAGAGCAACAATAACAATAATAACTACCTATGGCAGAGCTTCGATTACCCAACCGATACCTTACTTCCTGGGATGAAGATGGGATGGAACTTGGATTCAAATACAGAGAAGCACTTAACATCTTGGAAAATCACAGGTGAAGATCCTTCTTCCGGCGACTACACTTTCAAGCTAGATTACCGCGGTTTACCTGAGATTTTTCTGAGGAGAAACCAGACTATAATATACCGAAGTGGTCCATGGAACGGTGAGAGGTTCAGCGGTGTTCCAGAGATGCAACACGATACCGATTCAATTGTGTTCAGTTTCTCCGATGACGGCCACAGCGTGTTCTACTCATTCTCCATCGGGAAATCCTCCTTGCTATCGAGGCTAACGGTGACGTCAGATTCAGACGGCGAGCTTCAGCGGCGGACGTGGATTCAGAGCAGCGAATCTTGGAACAAGTTCTGGTACGCGCCGGCGGATCAGTGCGACCATTACAGGGAGTGTGGACCGTACGGAGTGTGTGACAACAATGCATCACCGGTTTGCACTTGTATGCAAGGGTTCAGCCCTAAGAATCCGGTGGCTTGGAATCTGAGAGATGGATCTGGCGGGTGCGTGAGGAAGACCGATCTGGATTGCCCGACGGACAAGTTCTTGCATCTTGAGAACATGAAGCTGCCGGAGACGACGACGGTGTTTGTTAACAAAAGCATGACGTTAACAGAATGTGGGAGTATGTGTGAGAGGAATTGTTCATGCACTGCATATGCAAACATTGATATCACAAATGGCGGAAGTGGATGTGTCATGTGGTTTGGTCAACTCTTTGACCTCAGAAACTACCCTTCCGGTGGCCAAGATCTCTTTGTTCGATTATCCGCGGCTGATATAGGATCTTCTGGCTCCAAACATCATAAAGCTGAGGCCATAGGCATCTCACTCAGTGTAGCTGTCATAGTTTTGGGACTGCTTGCTATTTGTTACTTAAGGAAGAAGAAACAACGCAGAGGTTCAGTAATCCACAGAAGTCATGATTTACTAATAAGTGAGGTGGTGCCCTCTAGAGGACACTCGGGTGAAAGGAACATGGATGATCTAGAGTTGCCCATGTTTGATTTTAATACCTTAACAATGGCTACCAACAACTTCTCTCAGGATAATAAACTTGGACAAGGAGGATTTGGCAGTGTTTATAGGGGAAGTTTGATTGAAGGCCCAGATATTGCTGTGAAGAGATTATCAAAAGACTCTGGACAGGGAATTGAGGAATTTAAGAATGAGGTCAAGTTAATTGTCAAGCTCCAACACCGAAACCTTGTTCGGCTGCTTGGTTGCTGTATTGAGAAGGATGAGAAGATGTTGATATATGAATATATGGAAAATAGAAGCCTTGACTCCATTTTGTTTGACAAAGCTAAAAGGCCCTTGCTAGATTGGAAAAAGCGATTCAATATTATATGCGGTATAGCTAGAGGGCTTCTTTATCTGCACCAAGATTCTAGATTTCGGATTATTCATAGGGATCTCAAAGCAAGTAATATTCTACTAGACAATGAAATGAACCCAAAGATTTCGGATTTTGGGATGGCCAGAATTTTTGGTAGTAATCAAACAGAAGCAAATACATTAAGAGTTGTAGGAACATATGGTTATATGTCTCCTGAATATGCTATGGATGGAAACTTTTCAATAAAATCCGATGTTTTTAGCTTTGGAGTTCTAGTATTGGAGATCATTACAGGAAAGAAAAATAGAGGGTTCTACTATGCCAATGATGAACTGAATCTTTTGGGAAATGTATGGAAGCAATGGAACGAAGGAACTGCTTTGGAAGTAATTGATCAATCCATTGGCAATTCATACACAGAATCTGAAGTTCTAAGATGCATACATGTTGGTCTCTTGTGTGTCCAAGAACGTGCAGAAGATAGACCAACGATGTCTTCGGTGGTTCTAATGTTGAGTAGTGAAGTTTCATTAATGCCGCGTCCTAGAAGTCCTGGGTTTTCTCTAGGAAGGAATCATCCTGAGACTGATTCATCTTCAAGTAATCAAGATAAAACATGGAGTGTGAATCAAGTCACAGTCACAATGCTGAATGCTAGGTAG 2514 0.4364 MPTSFTHSLNHLLTIPFFLFFFITSSTSSDTLTATQALRTNQTLLSQNQTFVLGFFRGSNTNYYLGIWYNNITPQTIVWVANRDNPIDNSTGYLKIGDDGNFLLLNSSGKTAWSSNATTAKTPILQLLETGNLVLQDSDQSNNNNNNYLWQSFDYPTDTLLPGMKMGWNLDSNTEKHLTSWKITGEDPSSGDYTFKLDYRGLPEIFLRRNQTIIYRSGPWNGERFSGVPEMQHDTDSIVFSFSDDGHSVFYSFSIGKSSLLSRLTVTSDSDGELQRRTWIQSSESWNKFWYAPADQCDHYRECGPYGVCDNNASPVCTCMQGFSPKNPVAWNLRDGSGGCVRKTDLDCPTDKFLHLENMKLPETTTVFVNKSMTLTECGSMCERNCSCTAYANIDITNGGSGCVMWFGQLFDLRNYPSGGQDLFVRLSAADIGSSGSKHHKAEAIGISLSVAVIVLGLLAICYLRKKKQRRGSVIHRSHDLLISEVVPSRGHSGERNMDDLELPMFDFNTLTMATNNFSQDNKLGQGGFGSVYRGSLIEGPDIAVKRLSKDSGQGIEEFKNEVKLIVKLQHRNLVRLLGCCIEKDEKMLIYEYMENRSLDSILFDKAKRPLLDWKKRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDNEMNPKISDFGMARIFGSNQTEANTLRVVGTYGYMSPEYAMDGNFSIKSDVFSFGVLVLEIITGKKNRGFYYANDELNLLGNVWKQWNEGTALEVIDQSIGNSYTESEVLRCIHVGLLCVQERAEDRPTMSSVVLMLSSEVSLMPRPRSPGFSLGRNHPETDSSSSNQDKTWSVNQVTVTMLNAR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00045 837 Gene3D Hepatocyte Growth Factor 348 424 - -
Stsc60439g00045 837 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 780 - -
Stsc60439g00045 837 Gene3D Transferase(Phosphotransferase) domain 1 594 796 - -
Stsc60439g00045 837 Pfam D-mannose binding lectin 76 182 IPR001480 -
Stsc60439g00045 837 SMART serkin_6 518 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00045 837 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Stsc60439g00045 837 CDD STKc_IRAK 524 789 - -
Stsc60439g00045 837 Gene3D - 23 153 IPR036426 -
Stsc60439g00045 837 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
Stsc60439g00045 837 CDD B_lectin 38 156 IPR001480 -
Stsc60439g00045 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 594 797 - -
Stsc60439g00045 837 SUPERFAMILY Protein kinase-like (PK-like) 503 816 IPR011009 -
Stsc60439g00045 837 Pfam Protein tyrosine and serine/threonine kinase 520 787 IPR001245 GO:0004672|GO:0006468
Stsc60439g00045 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 484 593 - -
Stsc60439g00045 837 MobiDBLite consensus disorder prediction 808 824 - -
Stsc60439g00045 837 Pfam PAN-like domain 349 413 IPR003609 -
Stsc60439g00045 837 Pfam S-locus glycoprotein domain 215 327 IPR000858 GO:0048544
Stsc60439g00045 837 ProSiteProfiles Protein kinase domain profile. 518 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00045 837 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Stsc60439g00045 837 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Stsc60439g00045 837 MobiDBLite consensus disorder prediction 798 824 - -
Stsc60439g00045 837 SMART ntp_6 348 427 IPR003609 -
Stsc60439g00045 837 Gene3D Phosphorylase Kinase; domain 1 493 593 - -
Stsc60439g00045 837 PIRSF SRK 2 837 IPR024171 GO:0004674
Stsc60439g00045 837 SMART blect_4 35 156 IPR001480 -
Stsc60439g00045 837 Pfam Domain of unknown function (DUF3403) 791 837 IPR021820 GO:0004674
Stsc60439g00045 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Stsc60439g00045 837 CDD PAN_AP_plant 344 428 - -
Stsc60439g00045 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 222 IPR036426 -
Stsc60439g00045 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00045 Stsc-Chr60439 178786 183281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00045 506 837 Receptor kinase-like Gene Family AT4G11530 58.160 3.11e-134 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60439g00045 PK_Tyr_Ser-Thr 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00045 - - gmx:100797331 1203.35