Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00044 ATGAAAATCTTCTTCATTCTCATTACCTCCTTCTTCATCACTCCATCAACCTCTTCAGATACTTTAACTGCAACACAAATCCTCAGAACCAACCAAACTCTACTTTCACAAAACAAAACCTTCGTTCTAGGCTTCTTCAGAGGCTCCAACACCAACTATTACCTCGGAATATGGTACCACAACTTCAATCCTCAATCAATAGTTTGGGTTGCTAACAGAGACAACCCCATTGACAACTCCACCGGCTATCTCAAGTTCGGAGACCAAGGAAACTTCCTCCTCCTCAATTCATCCGGTAAACCAGCATGGTCCTCCAACACAACCGCCGCCAAGAATCCACTTCTTCAGCTTCTTGATACCGGAAACCTTGTCCTCAAAGATTCATCAGACAACACCAATGATAACAACTACTTATGGCAGAGCTTCGATTATCCAACGGATACCTTCTTACCGGGGATGAAGCTCGGTTGGGACTTTGACAAAGGAACTGAGAAGCACTTAACATCATGGAAGATCACAGGTGAAGACCCTTCAAGCGGTGACTACACTATGAAGATAGATTACCATGGTTTACCTGAGGCTTTCCTTAGAAGAAACCAAACTATAATATTCCGAACTGGTCCTTGGAATGGTGAGAGATTCAGTGGGGCACCAGGGATGATTCAAGACCAAAGCAATGATCTCAAGTTCAATTTCACCTATGATGAGCATGGTGTGTTTTACTATTACTCAGTTACAAAGCCTTCCATGTTTTCAAGGACAATTGTGACATCTGATTCTAATGTTGGGGAGCTTCAAAGATACATGTTGGTACAAGGAAGTTGGACCAAGTTCTGGTATGAACCAGAGGCTCCATGTGATTATTATGGAGAGTGTGGTCCCTATGGAGTGTGTGACAAGAATGGCTCTCCGATTTGCACTTGTATGCATGGGTTCAGCCCTAAGAACCAAGAAGCTTGGAACTTGAATAATGGGTCTGAGGGGTGTGTGAGGAACACTCCTTTGAATTGTTCCACTGATAAGTTCTTGCATCGTCAGAACATGAAGCTGCCAGAGACAACCAATGTGTATGTGAATAAGAGTATGACACTTGATGAATGTGGGAGTTTGTGTAAGAGGAATTGTTCATGCACTGCATATGCAAACACTGATATCAGAAATGGAGGAACTGGTTGTGTTATGTGGGTTGGTCAACTCTTTGACATGAGTGTCTTCCCTTCCAATGGTCAAGATCTTTATGTCAGATTGTCAGCTTCTGATATAGGATCTAACAAGAATCATAGAGTAATTGAGGCTATTGGCATCACACTTGGTGCACTTGTTATAGTTTTGGGATTGGTTGCTATTTGTTACTTAAGGAACAAGAAACAGCAAAGATCTAGAGGTCATGATTCGTTAATGAATGAGATATACTCAGGAGGTGTTGAAAGGAACATGGATGATCTAGAGCTGCCAATGTTTGATTTTGATACCTTAACAATGGCTACAAACAATTTCTCTCAAGATAATAAACTCGGAGAAGGTGGCTTCGGTAGTGTTTATAGGGGGAGATTAATTGAAGGCCGAGAAATTGCTGTGAAGAGGTTATCAGAGGACTCTAGACAAGGAATTCTAGAATTTAAGAATGAAGTCAAGTTAATTATCAAGCTTCAACACCGAAATCTTGTTCGGCTGCTTGGTTGCTGCATTGAGAAGGAAGAGAAGATGTTGGTGTATGAGTATATGGAAAACAAAGGCCTTGATTCCATTTTGTATGACAAATCAAAAAGACACTTACTTAATTGGGAGAGACGCTTCAATATCATATATGGAATAGCAAGAGGACTTCTTTATTTGCATCAAGATTCAAGATTTCGGATTATTCATAGAGATCTGAAGACAAGTAATATATTACTAGATGGTGAAATGAATCCAAAGATATCGGATTTTGGAATGGCTAGAATCTTTGACAAAGACGAAATACAAACAAAAACATTAAGAATTGTTGGAACATATGGTTATATGGCACCCGAATATGCTATGTATGGAAAATTCTCAATAAAATCCGATGTTTTTAGCTTTGGAGTTATGGTATTGGAGATTATAACTGGAAAGAAGAACAGAGGGTGTTCTGATGATAACACTGAAGAATTGAATCTTCTGGAAAATATATGGAGGCATTGGCATAAAGGAACTGTAATGAAGCTGATTGATCCATCCATTAGCAATTCTTACACAGAATCTGAAGTTGTAAGATGTATACATATTGGACTCTTATGTATCCAAGAACGTGCAGAAGATAGACCAACAATGTCTTCGGTGGTCTTAATGTTGAGTAATGAAGCTCCATCAATGTCAAATCCTAAAACTCCTGGGTTTTCTGCAAGAAAAACCCATTCAGATATTGATTCATCTTCAAGCAGGCAAGATGAAACATGGAGTGTAAATGAAGTCACAATCACAGTGTTAGATGCTAGATAG 2460 0.3955 MKIFFILITSFFITPSTSSDTLTATQILRTNQTLLSQNKTFVLGFFRGSNTNYYLGIWYHNFNPQSIVWVANRDNPIDNSTGYLKFGDQGNFLLLNSSGKPAWSSNTTAAKNPLLQLLDTGNLVLKDSSDNTNDNNYLWQSFDYPTDTFLPGMKLGWDFDKGTEKHLTSWKITGEDPSSGDYTMKIDYHGLPEAFLRRNQTIIFRTGPWNGERFSGAPGMIQDQSNDLKFNFTYDEHGVFYYYSVTKPSMFSRTIVTSDSNVGELQRYMLVQGSWTKFWYEPEAPCDYYGECGPYGVCDKNGSPICTCMHGFSPKNQEAWNLNNGSEGCVRNTPLNCSTDKFLHRQNMKLPETTNVYVNKSMTLDECGSLCKRNCSCTAYANTDIRNGGTGCVMWVGQLFDMSVFPSNGQDLYVRLSASDIGSNKNHRVIEAIGITLGALVIVLGLVAICYLRNKKQQRSRGHDSLMNEIYSGGVERNMDDLELPMFDFDTLTMATNNFSQDNKLGEGGFGSVYRGRLIEGREIAVKRLSEDSRQGILEFKNEVKLIIKLQHRNLVRLLGCCIEKEEKMLVYEYMENKGLDSILYDKSKRHLLNWERRFNIIYGIARGLLYLHQDSRFRIIHRDLKTSNILLDGEMNPKISDFGMARIFDKDEIQTKTLRIVGTYGYMAPEYAMYGKFSIKSDVFSFGVMVLEIITGKKNRGCSDDNTEELNLLENIWRHWHKGTVMKLIDPSISNSYTESEVVRCIHIGLLCIQERAEDRPTMSSVVLMLSNEAPSMSNPKTPGFSARKTHSDIDSSSSRQDETWSVNEVTITVLDAR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00044 819 CDD EGF 285 313 - -
Stsc60439g00044 819 Pfam Protein tyrosine and serine/threonine kinase 501 769 IPR001245 GO:0004672|GO:0006468
Stsc60439g00044 819 Gene3D - 14 142 IPR036426 -
Stsc60439g00044 819 SUPERFAMILY Protein kinase-like (PK-like) 484 795 IPR011009 -
Stsc60439g00044 819 CDD B_lectin 25 145 IPR001480 -
Stsc60439g00044 819 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Stsc60439g00044 819 Gene3D Phosphorylase Kinase; domain 1 475 574 - -
Stsc60439g00044 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 574 - -
Stsc60439g00044 819 SMART serkin_6 499 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00044 819 Gene3D Hepatocyte Growth Factor 334 415 - -
Stsc60439g00044 819 SMART blect_4 25 145 IPR001480 -
Stsc60439g00044 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 15 142 - -
Stsc60439g00044 819 Pfam D-mannose binding lectin 67 171 IPR001480 -
Stsc60439g00044 819 Pfam Domain of unknown function (DUF3403) 777 819 IPR021820 GO:0004674
Stsc60439g00044 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 211 IPR036426 -
Stsc60439g00044 819 CDD STKc_IRAK 505 771 - -
Stsc60439g00044 819 SMART ntp_6 337 416 IPR003609 -
Stsc60439g00044 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 779 - -
Stsc60439g00044 819 ProSiteProfiles Protein kinase domain profile. 499 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00044 819 PIRSF SRK 1 819 IPR024171 GO:0004674
Stsc60439g00044 819 MobiDBLite consensus disorder prediction 775 793 - -
Stsc60439g00044 819 MobiDBLite consensus disorder prediction 775 803 - -
Stsc60439g00044 819 CDD PAN_AP_plant 333 417 - -
Stsc60439g00044 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Stsc60439g00044 819 ProSiteProfiles Bulb-type lectin domain profile. 19 138 IPR001480 -
Stsc60439g00044 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 762 - -
Stsc60439g00044 819 Pfam S-locus glycoprotein domain 204 316 IPR000858 GO:0048544
Stsc60439g00044 819 Gene3D Transferase(Phosphotransferase) domain 1 575 784 - -
Stsc60439g00044 819 ProSiteProfiles PAN/Apple domain profile. 337 417 IPR003609 -
Stsc60439g00044 819 Pfam PAN-like domain 337 402 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00044 Stsc-Chr60439 174007 177409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00044 429 804 Receptor kinase-like Gene Family AT4G23190 49.604 5.49e-125 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60439g00044 PK_Tyr_Ser-Thr 8.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00044 - - aip:107621495 1292.72