Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00042 ATGGCTACGGTGTTTTACCGACACGTGTCCACTCTGTTTCTGCTCTGTTTCTTCTTCTTCCTCTGTTTCTGTGCTCTGTTTTCCTCTGCAGCTGCAAGGTCCAGCATCACAACCACTCAATTCATTAGGAACCGTGACAATCTCGTCTCAGATGGAAACAACTTCGAAATGGGTTTCTTCACTCTCGATAACATCAACACTTACGTTGGGATTTGGTACTACAACATTCCTCAACCCTCCATAATTTGGGTCGCTAACAGAGACAACCCTATCAATGGCGATGGTGGCGCCATAACTATCCAGCAAGATGGAAACTTGGTCATCTTTGATGGCCAAAAACGCAAAGTTTGGTCAACTAATGTCACAATTTCTGAGAATGGTAACAAGACCACTGAAGCTGTTCTTGGTGATGATGGAAACCTCGTGCTTTCTCTCACTGATTCTAAGAGAAAAGTATGGCAGAGCTTTGAGGATCCAAGCGATACGTATTTACCGGGTATGAAGGTTCCAATAAATTCGCCAAAGGGGAAGAAAAATTATGTCTTTACTTCATGGAAATCAGATAAGGACCCTTCACCTGGGAGCTACACAATGGGGCTTGATCCTGAGAGTTTGCTTCAGATTGTGGTTTGGGAAGGAGGGAAAAGAAGGTGGAGGAGTGGTTACTGGGATGGAGGGGTATTCACTGGTGTGGAAATGACAGGAAGCTTGCTTAATGGTTTCACTATTGATAAAACAAGCTCTTCCTTTGTTTATAGCTTGCCCAATGATAGTGACAGTGATAAGGTGAGGTTTCAGATAACTTGGGATGGATTTGAGGAAGAGTTCAAGTGGGATGCATCTCAGAAACAATGGAATGTGTCTCAGAAAGGGCCTTCTAATGATTGTGAGGTTTATAACAAGTGTGGTAGCTTTTCAGCTTGTGATATTAGATCAGGTGAACCTGTTTGTAAGTGCTTAAGAGGGTTTAGAGGTGGTGGTGGTGGTGGTGGTAATGGTGGGTGTAAGAGGGTGACACCACTCAAGGCTGCTGCTGGCTCCTCTCAGGTTGGTGTCAAAGAAGATGGATTCTCCAGGCATCGGTGCACGAGGCTGCCGGATTTCGCGCAGCAAGGGAGCCTTGCTGGGGATGAGGATTGTGAGGGCTTTTGCTTGAAGAATAGTTCTTGCACTGCCTATGCTGTTGTTGGTGGGATTGGGTGCATGGTTTGGTATGGGGATTTGGTTGATCTTCAAGATTTTGGAGAAAATGTTGGAGAAACACTTTTTGTTCGTTTATCTGCTTCTGATTTAGATAACAGTGGGAAAAAGAACAAGATTGTGATAGTAATTGCTATTGTAGCAGGATTAATCTCTATAGGGATTTTTGTATTTATAGTATGGATGTTCAAGGCAAAACTCAGAGTTTTGTCAGCTTCATGTCGCAAGAACAACGATGTGATACCGATGTATGATGCAAGCAAGAGTAAAGAGATGTCCACAGAATTTTCAGCTTCAGCTGATCTTAGTTTGGAGGGGACTGAGCTAAGTGGACCAGAACTTCCACTTTTCAATTTTAGTTGTATTTCTGTGGCCACAGACCATTTTTCACAAGAAAATAAGCTTGGTGAAGGGGGTTTTGGTCCTGTTTACAAGGGAAAGCTTCCAAGTGGAGAACAAATAGCTGTCAAGAGGCTTTCAAGACATTCTGGCCAAGGTTTGGAGGAGTTCAAGAATGAAATGATGCTGATAGCTAAACTACAACACAGAAATTTGGTTAGACAAATGGGTTGTTCTATATATGGTGAAGAAAAATTGCTTGTATATGAATACATGCCCAACAAAAGCTTGGATCGCTTTTTATTTGATCCAGTCAAGCAAACGCAGTTAAACTGGCCAAGACGCTATGATATCATTGAAGGCATTGCAAGAGGACTACTTTATCTGCATCGAGATTCAAGACTAAGAATAATTCATCGAGATCTAAAAGCAAGCAACATTTTGTTGGATGAAAACATGAATCCAAAAATCTCGGATTTTGGACTGGCTAGAATATTTGGTGGAAACCAGAACGAAGCCAATACAACCAGAGTAGTTGGTACATACGGCTACATGGCTCCAGAATATGCAATGGAGGGTCTATTTTCAATTAAATCTGATGTATATAGTTTTGGTGTATTACTTCTAGAGATCGTGAGTGGTCGAAGGAACACTAGCTTTCGCCACTCGGATGACACAAGTCTCATTGGATATGCATGGCATCTTTGGAATGAAGGGAGAGCAATGGAGCTTGTGGATCCTTGCATTCGTGAATCAAGTCCTAAAGACAAAGCTTTGAGGTGCATACACATAGGGATGTTGTGTGTGCAAGATTCAGCATCTCATAGACCAAACATGTCCAGCGTGGTGTTGATGCTTGAGAGTGAAACAACCTCTCTTCCATTACCTTCACAGCCTTTGGTCACTTCCATGAGAAGATCTGAAGACAGAGAATTTCATATGGAAGGGCTTGATGTTTCAAATGATTTAACTGTCACAATGGTGGTTGGAAGATAG 2535 0.4237 MATVFYRHVSTLFLLCFFFFLCFCALFSSAAARSSITTTQFIRNRDNLVSDGNNFEMGFFTLDNINTYVGIWYYNIPQPSIIWVANRDNPINGDGGAITIQQDGNLVIFDGQKRKVWSTNVTISENGNKTTEAVLGDDGNLVLSLTDSKRKVWQSFEDPSDTYLPGMKVPINSPKGKKNYVFTSWKSDKDPSPGSYTMGLDPESLLQIVVWEGGKRRWRSGYWDGGVFTGVEMTGSLLNGFTIDKTSSSFVYSLPNDSDSDKVRFQITWDGFEEEFKWDASQKQWNVSQKGPSNDCEVYNKCGSFSACDIRSGEPVCKCLRGFRGGGGGGGNGGCKRVTPLKAAAGSSQVGVKEDGFSRHRCTRLPDFAQQGSLAGDEDCEGFCLKNSSCTAYAVVGGIGCMVWYGDLVDLQDFGENVGETLFVRLSASDLDNSGKKNKIVIVIAIVAGLISIGIFVFIVWMFKAKLRVLSASCRKNNDVIPMYDASKSKEMSTEFSASADLSLEGTELSGPELPLFNFSCISVATDHFSQENKLGEGGFGPVYKGKLPSGEQIAVKRLSRHSGQGLEEFKNEMMLIAKLQHRNLVRQMGCSIYGEEKLLVYEYMPNKSLDRFLFDPVKQTQLNWPRRYDIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTTRVVGTYGYMAPEYAMEGLFSIKSDVYSFGVLLLEIVSGRRNTSFRHSDDTSLIGYAWHLWNEGRAMELVDPCIRESSPKDKALRCIHIGMLCVQDSASHRPNMSSVVLMLESETTSLPLPSQPLVTSMRRSEDREFHMEGLDVSNDLTVTMVVGR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00042 844 Gene3D - 28 156 IPR036426 -
Stsc60439g00042 844 ProSiteProfiles Bulb-type lectin domain profile. 33 156 IPR001480 -
Stsc60439g00042 844 SUPERFAMILY Protein kinase-like (PK-like) 514 824 IPR011009 -
Stsc60439g00042 844 Pfam S-locus glycoprotein domain 218 324 IPR000858 GO:0048544
Stsc60439g00042 844 Gene3D Phosphorylase Kinase; domain 1 490 604 - -
Stsc60439g00042 844 Pfam Protein tyrosine and serine/threonine kinase 531 797 IPR001245 GO:0004672|GO:0006468
Stsc60439g00042 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 191 IPR036426 -
Stsc60439g00042 844 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 790 - -
Stsc60439g00042 844 SMART ntp_6 352 426 IPR003609 -
Stsc60439g00042 844 SMART blect_4 39 159 IPR001480 -
Stsc60439g00042 844 PIRSF SRK 5 844 IPR024171 GO:0004674
Stsc60439g00042 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 156 - -
Stsc60439g00042 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 605 807 - -
Stsc60439g00042 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 492 604 - -
Stsc60439g00042 844 ProSiteProfiles Protein kinase domain profile. 529 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00042 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Stsc60439g00042 844 CDD B_lectin 48 159 IPR001480 -
Stsc60439g00042 844 CDD PAN_AP_plant 351 427 - -
Stsc60439g00042 844 Gene3D Transferase(Phosphotransferase) domain 1 605 807 - -
Stsc60439g00042 844 ProSiteProfiles PAN/Apple domain profile. 352 427 IPR003609 -
Stsc60439g00042 844 SMART serkin_6 529 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00042 844 CDD STKc_IRAK 535 800 - -
Stsc60439g00042 844 Pfam PAN-like domain 353 411 IPR003609 -
Stsc60439g00042 844 Pfam D-mannose binding lectin 81 186 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00042 Stsc-Chr60439 162741 166557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00042 438 812 Receptor kinase-like Gene Family AT4G23230 52.394 4.07e-132 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60439g00042 PK_Tyr_Ser-Thr 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00042 - - gmx:102660295 1112.44