Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00041 ATGTTACTTCACTTCATCAGAGCAGACATACACATACTAGTTTTCCTGCTAGTAACACTTACTAGCTTCTGCTATGTTGCAACTTCCTTATTAGACACCATAACTTCCTCTAGTTACATCCTTAAGGACCCTGAAACCTTAAGCTCCAACAACACTATGTTCCACCTAGGATTCTTCACCCCTTCTAACTCATCAACCTTCACCTACCTTGGAATTTGGTACATGTCCAAATCCTCTCTGGTCTGGGTTGCCAACAGAAACCAACCTATAAAGGATTCCTCTTCAGGGCATCTCAAAATATCTGAGGATGGAAACCTTGTTGTGATGAACCAACAGAATCAGATTCTTTGGTCAACAAATGTCACCAATATTACATCCAACACAACAGCACAGCTTCAGAACACCGGGAACCTTGTGTTGCAAGAAAACACCACAGGAAGGATCCTTTGGCAAAGTTTCCAGCACCCTGCAAATACTTTCTTGCCGAAAATGGAGCTTAGCACCAATGAGATTACTGGCCAGAGAGTAAAACTCACCTCATGGAGAACTCCTAGTGATCCATCCATAGGAGACTTCTCTATGAGTCTTGAAAGACTTAACATCCCTCAAGTGTTCATATGGAGAGGAACTCAACCTTATTGGCGAAGTGGTCCATGGAACGGTCAAGTTTTTATTGGGATACCTACAATGAACACTAACTATCTTGACGGATTCTACTTAGATGGTGAAGGTCCAAACAATGGCACCTACTACCTCTCATACAACTATGCGAACACGACGATGATGTATGTGTTGAGTCCTGATGGAAACTTCCATGAAACCTATTGGGATTATGCAAAGAGAGAATGGACTGTGGACTGGTTTGCTATAAGCTCAGAGTGTGATTTTTATGGAAAGTGTGGTCCCTTTGGAAGCTGTGATCCTACAAATTCACCTATATGCAGCTGTTTGAGAGGGTTTGAGCCAAGGAATGCTCAAGAGTGGAGTAAAGGAAACTGGAGCAGCGGTTGTGTGAGGAAGGAGCCTCTGCAGTGTGATGATAGAGTTAGAAATAATAGTAGAGGTGGAGATGGGTTTGTAAGGCTGCAAAATGTGAAGGTTCCAGATTTTTCCCAGTGGATGTCCTCTATTGCTTATGATTGCAGAACTGAGTGCTTGGCAAATTGTTCTTGCATTGCATATGCTTATGATTCTGGCATTGGCTGCATGTTATGGACTGGAAACTTGATTGACATACAGAAGTTCTCAATGGGAGGAATTGATCTTTACATTCGAGTTCCCTCTTCTGAACTTGTGAAAGCATTTCAAAATCATGTTGATGATATTAGTCAAGTTAAACTTCAGGAGCATTCACTATTTGAGCTTGAAAAGCTTGCTACTGCAACAAACAACTTTCACTCAGATAATAAGCTAGGACAAGGTGGTTTTGGATCTGTATATAAGGGTAGATTGGAAGATGGACAGGAGATAGCAGTTAAAAGACTTTCAAAAACATCTGGACAAGGTGCAGAAGAATTTATGAATGAAGTTATGGTAATGTCAAAGCTTCAACACCGGAATCTTGTCAGACTTCTTGGATGTTGCATCGAAAGAGATGAAAAGATTTTGGTCTATGAATACCTACCAAATAGAAGCTTGGATGCACATATATTTGATCCACCTAAACAAAAGGCATTAAATTGGGAAAAACGTTTTAACATTCTTGAAGGAATCGCCCGGGGTCTACTTTATCTTCATAGGGATTCTAGACTAAAGATTATACACAGAGATTTGAAACTAAGTAATATATTGTTAGATGATGAGTTAAACCCGAAAATATCAGATTTTGGCATGGCAAAGATTTTTGAGAATACTGAAAATGAGGCCAATACTAGAAGGATTGTTGGAACATTTGGTTATATATCACCAGAATATGCTTTACAAGGACTATTTTCGGAAAAATCTGATGTATTTAGCTTTGGTGTTTTACTACTGGAGATTATCAGTGGCAGAAAAAACAGCAGCTTTCATGAAAATGTTGAATCTTTGAGCCTTTTGGGGTTTGCATGGAAATTGTGGGAAAATGACAACATAAGATCACTAATAGATCCTGAAATATCAGATTCAAGCAATAAAGAAGATATAAAGAGGTGCATACATATTGGTCTTTTGTGTGTACAAGAACTTGCAAGGGATAGGCCTACTATGACTTCAGTAATTTCAATGCTTAATAGTGAGACTGTCAATCTTCCTCCTCCCAAACAGCCAGCATTTATTCAAATACAGACTATGTTAGATGTAGAATCTTCTCTAAGAAATGATGGAGCATGTTCCATCAATTACATGAGTGTGACAAACATCCAAGGAAGATAA 2352 0.3916 MLLHFIRADIHILVFLLVTLTSFCYVATSLLDTITSSSYILKDPETLSSNNTMFHLGFFTPSNSSTFTYLGIWYMSKSSLVWVANRNQPIKDSSSGHLKISEDGNLVVMNQQNQILWSTNVTNITSNTTAQLQNTGNLVLQENTTGRILWQSFQHPANTFLPKMELSTNEITGQRVKLTSWRTPSDPSIGDFSMSLERLNIPQVFIWRGTQPYWRSGPWNGQVFIGIPTMNTNYLDGFYLDGEGPNNGTYYLSYNYANTTMMYVLSPDGNFHETYWDYAKREWTVDWFAISSECDFYGKCGPFGSCDPTNSPICSCLRGFEPRNAQEWSKGNWSSGCVRKEPLQCDDRVRNNSRGGDGFVRLQNVKVPDFSQWMSSIAYDCRTECLANCSCIAYAYDSGIGCMLWTGNLIDIQKFSMGGIDLYIRVPSSELVKAFQNHVDDISQVKLQEHSLFELEKLATATNNFHSDNKLGQGGFGSVYKGRLEDGQEIAVKRLSKTSGQGAEEFMNEVMVMSKLQHRNLVRLLGCCIERDEKILVYEYLPNRSLDAHIFDPPKQKALNWEKRFNILEGIARGLLYLHRDSRLKIIHRDLKLSNILLDDELNPKISDFGMAKIFENTENEANTRRIVGTFGYISPEYALQGLFSEKSDVFSFGVLLLEIISGRKNSSFHENVESLSLLGFAWKLWENDNIRSLIDPEISDSSNKEDIKRCIHIGLLCVQELARDRPTMTSVISMLNSETVNLPPPKQPAFIQIQTMLDVESSLRNDGACSINYMSVTNIQGR 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00041 783 Pfam Domain of unknown function (DUF3403) 738 783 IPR021820 GO:0004674
Stsc60439g00041 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 153 - -
Stsc60439g00041 783 CDD B_lectin 38 156 IPR001480 -
Stsc60439g00041 783 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Stsc60439g00041 783 PIRSF SRK 4 446 IPR024171 GO:0004674
Stsc60439g00041 783 PIRSF SRK 435 783 IPR024171 GO:0004674
Stsc60439g00041 783 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 726 - -
Stsc60439g00041 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 430 540 - -
Stsc60439g00041 783 Gene3D - 26 154 IPR036426 -
Stsc60439g00041 783 ProSiteProfiles EGF-like domain profile. 290 326 IPR000742 -
Stsc60439g00041 783 ProSitePatterns Protein kinases ATP-binding region signature. 471 493 IPR017441 GO:0005524
Stsc60439g00041 783 CDD EGF_CA 293 324 - -
Stsc60439g00041 783 ProSiteProfiles PAN/Apple domain profile. 345 427 IPR003609 -
Stsc60439g00041 783 SMART ntp_6 354 426 IPR003609 -
Stsc60439g00041 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Stsc60439g00041 783 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 221 IPR036426 -
Stsc60439g00041 783 Gene3D Phosphorylase Kinase; domain 1 427 540 - -
Stsc60439g00041 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 541 744 - -
Stsc60439g00041 783 SMART blect_4 38 156 IPR001480 -
Stsc60439g00041 783 ProSiteProfiles Protein kinase domain profile. 465 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00041 783 Gene3D Transferase(Phosphotransferase) domain 1 541 743 - -
Stsc60439g00041 783 CDD STKc_IRAK 471 737 - -
Stsc60439g00041 783 CDD PAN_AP_plant 342 427 - -
Stsc60439g00041 783 Pfam PAN-like domain 354 412 IPR003609 -
Stsc60439g00041 783 Pfam D-mannose binding lectin 80 182 IPR001480 -
Stsc60439g00041 783 SUPERFAMILY Protein kinase-like (PK-like) 451 764 IPR011009 -
Stsc60439g00041 783 SMART serkin_6 465 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00041 783 ProSiteProfiles Bulb-type lectin domain profile. 32 153 IPR001480 -
Stsc60439g00041 783 Pfam Protein tyrosine and serine/threonine kinase 467 736 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00041 Stsc-Chr60439 155862 158825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00041 453 783 Receptor kinase-like Gene Family AT3G45860 55.030 2.16e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60439g00041 PK_Tyr_Ser-Thr 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00041 - - adu:107468469 1085.86