Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00040 ATGGGGCTAAATCGGTTTATAGACTCACTCATACTACTTATCTCTTTTTCCATATATCCATATTTTGCCACTTCCTTAGATACAATCACCTCTTCTTATGTCCTTAAGGCCCCTCAAATTTTAAGCTCCAATGATGGTAAGTTCCATCTTGGATTCTTCACCCCTCCTAACTCCACCTATTCCTACCTTGGAATCTGGTATATGTCCGAAACCGCTGTTGTATGGGTTGCCAACAGAAACCAACCTATAAAGGACTCTTCTCTAGGGCAGCTCAAGATTTCTGATGATGGAAACCTTGTTGTGATGAATGCAAACAAGGACATCCTTTGGTCAACAAATCTCACCAATATTCCATCTAAAACAAGGGCACAGCTTCAGAACACTGGAAACCTTGTGTTGCAAGAAAACTCCACAGAAAGCATTCTATGGCAGAGTTTCCAACACCCTACAAACACTCTCCTGCAGAAAATGGAACTTAGCACCGGCTGGATTGATGGCGAGAGAAGCAGACTCACCTCCTGGAAAAGTCCTCAGGATCCGGCAATCGGCGAATTCTCTGTGAGTTTTGAACGCCTAAATGTCCCTGAAATGTATGCATGGAGAGGCAGCAAACCTCACTGGCGTAGTGGTCCATGGAATGGCCAAATGTTTATTGGGATACCTTCCATGAGTACCAGCTATCTTAATGGAAATTATGTGTATGCAAGTGATGGAGATAATGAAACTTACTATATTGGTTTTAACTATGCTAACCAATCTCTATTACTTATTCATATGTTAACTTATGATGGAAACCCACAAATATGGACTTGGGATTATGCAAATAGACAGTGGAACATAGAGTTCTCATCAGTAAGTACTGAGTGTGATGTTTATGGCAAGTGTGGAGCATTTGCAAGTTGTGATCCTAGAAGCTCTCCAATTTGCAGCTGTTTGAGAGGGTATGAGCCAAGCAATGTTGAGGAGTGGAATAGGCAAAACTGGAGCAGCGGTTGTGTTAGAAAGAAGCCTTTGCAGTGTGAGGGAGCCATAAATGGTGAAGGGGATGGCTTTCTGGTGCTGCAGAATGCGAAGGTTCCAGCTTCTCTGCTGATGTCACCTTCTCTTGGTCAAGATTGCAGAAGTCCATGCTTGGTGAACTGTTCTTGCATAGCATATGCATATGATGTTGGTATCGGTTGCATGTTATGGATTAAAGAACTAATTGACATACAAGTATTCTCAAATGGTGGAGTTGATCTTTACATTCGAGTTCCCTATTCAGAACTTGAGAGAGAAATTTCGAGAGCCAGGAGCAGAAGCCAAATCAATGTCCTAGGTAGAGTTAAACTCCCAGACTCAGAGCTCTTGCAATTTGAGTTTCAAAGACTTGTTGCTGCAACAAATAACTTTCATCAGTCTAATAAGATAGGGCAAGGTGGTTTCGGACCGGTATATAAGGGCACATTGGAAGATGGACAAGAAATAGCAGTTAAAAGGCTTTCAAGAGCATTTGGGCAAGGATATGATGAATTTATGAATGAAGTCATGTTAATATCAAAACTTCAACATCGTAATCTTGTTAGACTTCTTGGATGTTGTATAGAAGGAGATGAAAATATTTTGATCTATGAATACATGCCAAACAAAAGTCTTCATGCATATATGTTTGAGTCATTCAACCAGATATTAGATTGGAACCAACGTTTCAGTATAATCGAAGGAATAGCTCGGGGTTTACTTTATCTTCACAGAGACTCTAGACTAAGGATTATACATAGAGATTTAAAGTTGAGTAACATATTGCTTGATAATGACCTAACTCCAAAAATTTCAGACTTTGGTATGGCAAAAATTTTCAGTTGGACCGAAGATGTGATCAATACTAGAAGGATTGTTGGAACATTTGGTTATATGTCGCCAGAATATGCTATGGAAGGACTATTTTCGGAAAAATCTGATGTATTTAGCTTCGGCGTCTTATTGTTGGAGATTGTGAGTCGGAGAAAAAATACAGGTTCTTATGAGGACGCAGAATCTTTCAGTCTCTTAGGATTTGCATGGAATTTATGGAATGCTGATAGGATTATGTCTCTAGTGGATCCAGCAATATCAAGTTCATGTAACAAAGAAGATACAATGAGGTGCATACATATTGGGCTTCTATGTGTACAAGAGCTGGCAAGAGATAGGCCTACAATGACTTCAGTAATTTCAATGCTTAATAGTGAGACACTGAATCTTCCTCTACCAAAACAGCCAGCATTCATTCATAAGCAGAGTATGTTGGATATAGAGTCTTCTATTACAAAGGATGGATTATTATCCACCAATTATGTCAGTGTAACTAATATAGAAGCAAGATAA 2346 0.3951 MGLNRFIDSLILLISFSIYPYFATSLDTITSSYVLKAPQILSSNDGKFHLGFFTPPNSTYSYLGIWYMSETAVVWVANRNQPIKDSSLGQLKISDDGNLVVMNANKDILWSTNLTNIPSKTRAQLQNTGNLVLQENSTESILWQSFQHPTNTLLQKMELSTGWIDGERSRLTSWKSPQDPAIGEFSVSFERLNVPEMYAWRGSKPHWRSGPWNGQMFIGIPSMSTSYLNGNYVYASDGDNETYYIGFNYANQSLLLIHMLTYDGNPQIWTWDYANRQWNIEFSSVSTECDVYGKCGAFASCDPRSSPICSCLRGYEPSNVEEWNRQNWSSGCVRKKPLQCEGAINGEGDGFLVLQNAKVPASLLMSPSLGQDCRSPCLVNCSCIAYAYDVGIGCMLWIKELIDIQVFSNGGVDLYIRVPYSELEREISRARSRSQINVLGRVKLPDSELLQFEFQRLVAATNNFHQSNKIGQGGFGPVYKGTLEDGQEIAVKRLSRAFGQGYDEFMNEVMLISKLQHRNLVRLLGCCIEGDENILIYEYMPNKSLHAYMFESFNQILDWNQRFSIIEGIARGLLYLHRDSRLRIIHRDLKLSNILLDNDLTPKISDFGMAKIFSWTEDVINTRRIVGTFGYMSPEYAMEGLFSEKSDVFSFGVLLLEIVSRRKNTGSYEDAESFSLLGFAWNLWNADRIMSLVDPAISSSCNKEDTMRCIHIGLLCVQELARDRPTMTSVISMLNSETLNLPLPKQPAFIHKQSMLDIESSITKDGLLSTNYVSVTNIEAR 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00040 781 ProSiteProfiles PAN/Apple domain profile. 340 419 IPR003609 -
Stsc60439g00040 781 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 540 742 - -
Stsc60439g00040 781 Gene3D - 21 147 IPR036426 -
Stsc60439g00040 781 SUPERFAMILY Protein kinase-like (PK-like) 448 764 IPR011009 -
Stsc60439g00040 781 SMART ntp_6 346 418 IPR003609 -
Stsc60439g00040 781 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Stsc60439g00040 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Stsc60439g00040 781 Pfam PAN-like domain 346 404 IPR003609 -
Stsc60439g00040 781 Pfam S-locus glycoprotein domain 207 318 IPR000858 GO:0048544
Stsc60439g00040 781 Gene3D Transferase(Phosphotransferase) domain 1 540 741 - -
Stsc60439g00040 781 CDD STKc_IRAK 470 735 - -
Stsc60439g00040 781 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 724 - -
Stsc60439g00040 781 Gene3D Phosphorylase Kinase; domain 1 425 539 - -
Stsc60439g00040 781 SMART blect_4 32 149 IPR001480 -
Stsc60439g00040 781 CDD B_lectin 32 149 IPR001480 -
Stsc60439g00040 781 Pfam Domain of unknown function (DUF3403) 736 781 IPR021820 GO:0004674
Stsc60439g00040 781 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 146 - -
Stsc60439g00040 781 SMART serkin_6 464 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00040 781 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 429 539 - -
Stsc60439g00040 781 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 214 IPR036426 -
Stsc60439g00040 781 Pfam Protein tyrosine and serine/threonine kinase 465 734 IPR001245 GO:0004672|GO:0006468
Stsc60439g00040 781 CDD PAN_AP_plant 337 419 - -
Stsc60439g00040 781 ProSiteProfiles Protein kinase domain profile. 464 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00040 781 Pfam D-mannose binding lectin 73 175 IPR001480 -
Stsc60439g00040 781 PIRSF SRK 440 781 IPR024171 GO:0004674
Stsc60439g00040 781 PIRSF SRK 3 444 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00040 Stsc-Chr60439 152123 155104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00040 447 749 Receptor kinase-like Gene Family AT4G23230 57.895 2.17e-119 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60439g00040 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00040 - - jre:108999069 861.292