Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00038 ATGATGCTTATGGGGTCACTGGCTTTGCTACTAACATTTTTCTTGTGTCATGTTCCCACTTCCACTTCCTTGGACACCATCACCTCTTCCTACATCCTTAAGGCCCCCGAAACATTAAGCTCCAACAATGGTTACTTCCAACTTGGATTTTTCTCCCCTTCTAACTCATCCACCTTTTCATACTACCTAGGCATCTGGTTCATGACCAAAGCCTCTGTCGTATGGGTGGCCAACAGAAACCAACCAATCAATGATTCTTCTTCATCTTCTGGCATGATCAAGATATCAAATGATGGAAACCTTGTTTTGATGAATTCAAATAGTGTGGTCCTTTGGTCAACACATGCCTCCAATATTTCATCCAACACAGTAGCTAAGCTTCTAGACACTGGTAACCTTGTGTTGCAAGAAAACTCCACAGGAACAACCCTATGGGAGAGTTTCCAACACCCCACAAACGCTTACTTGCAGGACATGGAACTCAGCACTGGTAACATTGATGGCGAAAGAGTAAAACTCACGTCCTGGAGAAGCCCTCAGGATCCATCCATTGGAGAATTTTCAGCGAGTCTTGAACGGTTGAATATCCCAGAATTAATGGTATGGAGAGGGAGCCAACCATACTGGCGTAGTGGTCCATGGAATGGTCAAAAATTTCTAGGGGTAGCTAACATGACAAGCAACTTTCTTACAGGGTTTTACTTAGGTGAGGAAAACATGGATAACGGAACCACTAATTACTATCTTGCTTACAACCTCGGTGACAATCCTGATTCTCAATACTACTACATGTTGAGTGCTGATGGAAACGTATATGAAATGTATTGGGATCTTGATAAGAGAGACTGGCTTATCTCGTGGACATCTAAAAAATCAGACTGTGATGTGTATGGTAAGTGTGGAGAGTTTGGAATTTGTGATCCCGCAGGCTCTCCAATTTGCAGCTGTTTGAGAGGGTATATGCCAAGGAATCCTGAGGAATGGAATAAACAGAACTGGAGCAGCGGTTGTGTTAAGAAGGAACCTTTGCAGTGTGAGAGTAAGAGAGTCACAAATAATAAAGAAGATGGATTTGTGAAGGTGCAGAATGCAAAGGTGCCAGCCTCTATCATGTGGTCTTCTACCAATATTGGGAATGACTGCGGAGGTGTTTGCTTGGGGAACTGCTCCTGCATAGCATATGCATATGATTCTGGCACTGGTTGTATGTTTTGGACTGCAAACCTAACTGACATCCAAAGCTTCTCCCTGGGAGGAATTGATCTTTACATTCGAGTCGCCAATTCAGAGCTTGGTGGAGACAAGAAAAATGACGGAGTGATCATTGCAGTTCCAGTCGTAGTAGGAATGGCTATCATTCTCACCTGTGCTTATATCTTCTGGAAAAGGATTCAAATCAGAGAGAGAGATAAAACCAAACCAAGTGTAAAAGGCAATGACCTAGTAAAAGTCCCAGAGCTTTTCCAATTTGAGTTTGAAAGACTTGTTGCTGCAACAAATAACTTCAGTCCATCTAATAAGCTAGGAGAAGGAGGTTATGGACCGGTATATAAGGGAACATTATTGGAAGATGGACAGGAAATAGCAGTTAAAAGGCTTTCAAGATCATCCGGGCAAGGATATGAAGAATTTATGAATGAGATTATGGTTATATCAAAGCTTCAACATAGAAATCTTGTCAGACTTCTTGGATGTTGTATAGAAAGAGATGAGAAGATTTTGATCTATGAGTACATGCCAAACAAAAGTCTAGATGCATATATGTTTGATCAATCAAAACACATATTGAATTGGGAAGAACGTTTTAGTATAATCGAAGGAATAGCTCGGGGCTTGCTTTACCTTCACAGAGATTCTAGACTGAGAATTATACATAGAGATTTGAAGATGAGTAACATATTACTTGATGAAGAGCTAAATCCAAAAATTGCGGATTTTGGCATGGCAAAGATTTTTACTCGGACTCAAGATGCGGTCAATACTAAAAGGGTTGTCGGAACATACGGTTACATGTCACCAGAATACGTCATACAAGGAATATTTTCAGAGAAGTCTGATGTATTTAGTTTTGGTGTTTTACTGCTGGAGATTGTGAGTAAAAGAAAAAATGCCAGCTTTTATGAAGATGCTGAGTCTTTGAGCCTTTTAGGATTTGCATGGAATTTATGGTGTGCTGATAAGATTATGTCTCTAGTGGATCCAGCAATATCAAGTTCATGCAAGAAAGAATATATTATAAGGTGCATACATATTGGCCTTTTATGTGTACAAGAACTGGCAAGAGATAGACCTACAATGACATCAGTAGTTTCAATGCTTAGTAGTGAGACAGTGAATCTTCCTCCTCCAAAACAGCCAGCATTCATTCTAAGGCAGGCTATTATTGATATAGAGTCTTCTCTTACAAATGATGGATTTGGCTCCATCAACAATGTCAGCATAACAAATATCCAAGGAAGATAA 2463 0.4024 MMLMGSLALLLTFFLCHVPTSTSLDTITSSYILKAPETLSSNNGYFQLGFFSPSNSSTFSYYLGIWFMTKASVVWVANRNQPINDSSSSSGMIKISNDGNLVLMNSNSVVLWSTHASNISSNTVAKLLDTGNLVLQENSTGTTLWESFQHPTNAYLQDMELSTGNIDGERVKLTSWRSPQDPSIGEFSASLERLNIPELMVWRGSQPYWRSGPWNGQKFLGVANMTSNFLTGFYLGEENMDNGTTNYYLAYNLGDNPDSQYYYMLSADGNVYEMYWDLDKRDWLISWTSKKSDCDVYGKCGEFGICDPAGSPICSCLRGYMPRNPEEWNKQNWSSGCVKKEPLQCESKRVTNNKEDGFVKVQNAKVPASIMWSSTNIGNDCGGVCLGNCSCIAYAYDSGTGCMFWTANLTDIQSFSLGGIDLYIRVANSELGGDKKNDGVIIAVPVVVGMAIILTCAYIFWKRIQIRERDKTKPSVKGNDLVKVPELFQFEFERLVAATNNFSPSNKLGEGGYGPVYKGTLLEDGQEIAVKRLSRSSGQGYEEFMNEIMVISKLQHRNLVRLLGCCIERDEKILIYEYMPNKSLDAYMFDQSKHILNWEERFSIIEGIARGLLYLHRDSRLRIIHRDLKMSNILLDEELNPKIADFGMAKIFTRTQDAVNTKRVVGTYGYMSPEYVIQGIFSEKSDVFSFGVLLLEIVSKRKNASFYEDAESLSLLGFAWNLWCADKIMSLVDPAISSSCKKEYIIRCIHIGLLCVQELARDRPTMTSVVSMLSSETVNLPPPKQPAFILRQAIIDIESSLTNDGFGSINNVSITNIQGR 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00038 820 SMART serkin_6 502 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00038 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Stsc60439g00038 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 216 IPR036426 -
Stsc60439g00038 820 Pfam S-locus glycoprotein domain 209 323 IPR000858 GO:0048544
Stsc60439g00038 820 Gene3D Phosphorylase Kinase; domain 1 463 578 - -
Stsc60439g00038 820 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Stsc60439g00038 820 ProSiteProfiles Bulb-type lectin domain profile. 24 148 IPR001480 -
Stsc60439g00038 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 578 - -
Stsc60439g00038 820 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 763 - -
Stsc60439g00038 820 Pfam PAN-like domain 352 412 IPR003609 -
Stsc60439g00038 820 SUPERFAMILY Protein kinase-like (PK-like) 487 794 IPR011009 -
Stsc60439g00038 820 SMART ntp_6 353 426 IPR003609 -
Stsc60439g00038 820 Gene3D - 20 149 IPR036426 -
Stsc60439g00038 820 CDD B_lectin 30 151 IPR001480 -
Stsc60439g00038 820 SMART blect_4 30 151 IPR001480 -
Stsc60439g00038 820 CDD STKc_IRAK 508 773 - -
Stsc60439g00038 820 Pfam Domain of unknown function (DUF3403) 775 820 IPR021820 GO:0004674
Stsc60439g00038 820 CDD PAN_AP_plant 342 427 - -
Stsc60439g00038 820 Pfam D-mannose binding lectin 73 177 IPR001480 -
Stsc60439g00038 820 ProSiteProfiles PAN/Apple domain profile. 345 427 IPR003609 -
Stsc60439g00038 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 781 - -
Stsc60439g00038 820 PIRSF SRK 1 820 IPR024171 GO:0004674
Stsc60439g00038 820 Pfam Protein tyrosine and serine/threonine kinase 505 773 IPR001245 GO:0004672|GO:0006468
Stsc60439g00038 820 ProSiteProfiles Protein kinase domain profile. 502 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00038 Stsc-Chr60439 144225 147448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00038 426 788 Receptor kinase-like Gene Family AT4G23230 52.732 1.62e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60439g00038 PK_Tyr_Ser-Thr 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00038 - - ahf:112714694 1366.29