Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00036 ATGGACTTAACAGTTTTGCTCTTACTCTTACTATCCATCAAAATTGCCACTTCCAGAGACACTATCACACCCTCACATCCCCTCAATGAACCAGAAACTTTAAGCTCTAGCAATGGCATGTACCACCTTGGATTCTTCACGCCAACCAACTACTCCTACCTCGGAATCTGGTACATGTCCAACCCCCCTATCGTCTGGGTTGCCAACAGAGAACAACCTATAAAGAATTCTTCTTCTGCTGTACTCCAAATATCTCAAGATGGAAACCTTGTTATCATGGATAATACAAACAAAAATGGAATTCTTGTTTGGTCAACAAACCTCTCCAATATTTCATCCAACACAACAGCACAGCTTCTTAACACCGGCAACCTTGTGCTGCAAGAAAACACCACAGGAAGTATCCTTTGGCAGAGTTTCCAACACCCTACAAACACCTTGTTGCAGAATATGCAGCTTAGCACAAATAAGTTCACCGGAAAGAAAGTAAAACTCACTTCCTGGAGAACTCCTCAGGATCCATCCTTGGGAGAGTTCTCCTTGAGCCTCGAACGCCTTAGTATCCCTGAAGAGTTCGTCTGGAAGGGAGCTCAACCTTACTGGCGTAGCGGTCCGTGGAACGGTGTAACTTTTCTTGGAATACCTGGGAATAACATAAACAATCTTGATGGATTTTACTTGGATAGATCTTATGATAATAACGGCACTTACTATCTTTCTTTCAACTTTGCAAATCAGTCTCTCTTGTTGATCTGTGTGTTAACTGATGATGGAAACATTAAAGACTATTATTGGGATTATGTGAAGAAAAATTGGTCAATTGCATGGATAGCTATCAACTCAGATTGTGATCTGTATGGCAAGTGTGGAGCATTTGGAATCTGTGATCGAACAAGTGAACCTATTTGTAGCTGCTTACCAGGGTTTGAACCAAAGAATGCTACTGAATGGAATAGCCAAAATTGGAGTAGTGGTTGTGTGAGGAAGAAAGCTCTGCAGTGTGAAGATAATGGATTTGTGATGTTAGAGAATTCTAAGACAGCAGACTTTGCAGTTTGGTCCTCTCCTACTGATTATGATTGCAGAACTCAGTGCATTCGAAACTGTTCTTGTGAAGCATATGCATATGATGCTGGTATTGGCTGCATGCTATGGGCTGGGAACTTAATTGACATTCAAAGGTTCTCAACTGGAGGAACCGATCTTTATATTCGTGTTCCCAATTCAGATTCTGGTAAAAAGAAAAATAATGTCACAGTAATCGTCGCAGTTACAGTCGGTGTAGGAGTGATTGTCCTTGTGTCATGCATATTTATCTTGTGGAAAAGAACTTCAAGGAAAGATGTAGATAGAGCAAATTCAGAAAGTCAGGGAAGAGTACAGAAAAATGAACTTCTTGAGCTTTCACAGTTTGAGTTTGAAAGGCTTGCTATAGCAACAAACAACTTTCACTTAAGTAATAAACTAGGACAAGGGGGTTTTGGACCAGTATATAAGGGTACACTGGAAGATGGGCAGGAAATAGCAGTTAAAAGGCTTTCAAGAGCATCTGGACAAGGGCAAGAAGAATTTATGAATGAGGTGTTGGTAATATCAAAGCTTCAACATCGAAATCTTGTCAGACTTCTTGGATGTTGTATTGAAAGAGATGAAAAGATTTTGATCTATGAATACATGCCAAATAGGAGTCTTGATGCATATATGTTTGATCCATCTAAACAAGTTTTAAGTTGGGAAAAACGTTTCGCTATAATCGAAGGAATAGCTCGTGGTTTACTTTATCTTCATAGAGATTCTAGATTAAGAATTATACACAGAGATCTGAAGTTAAGCAATATATTGCTTGATGGAGAGTTAAATGCAAAAATTTCAGACTTTGGTATGGCAAAGATTTTTGGTCACACTGAAGATGAAGCTAATACTAGAAGGGTTGTCGGAACATTCGGTTATATGTCACCGGAGTATGTCATGGAAGGACTATTTTCAGAAAAATCTGATGTATTCAGTTTTGGTGTTTTAATATTGGAGATTGTTAGCAAGAGAAAAAATGCTAGTTTTTATGAGGATGCTGAATCTCTAAGCCTTATTGGATTTGCATGGAAACTGTGGAATGATGATATGATTACAGCTCTAATAGATGCAGAAATAAGAAATGTGAGTAGTGTTGCAGATATAATGAGGTGCATTCACATTGGGCTTCTGTGTGTGCAAGAACTTGCAAGGGATAGGCCTACTATGACTGCAGTAATTTCAATGCTTAACAGTGAAACTGTTAATCTTCCTCCGCCAAAGCAGCCGGCGTTCATGCATAGGCAGTCAATGTTGGATACAGATTCTTCTTCTCATAGAACTAGAAGTGATGGATCATATTCCATCAATTATTTGAGCTTAACAAACATGCAAGGAAGGTAG 2412 0.391 MDLTVLLLLLLSIKIATSRDTITPSHPLNEPETLSSSNGMYHLGFFTPTNYSYLGIWYMSNPPIVWVANREQPIKNSSSAVLQISQDGNLVIMDNTNKNGILVWSTNLSNISSNTTAQLLNTGNLVLQENTTGSILWQSFQHPTNTLLQNMQLSTNKFTGKKVKLTSWRTPQDPSLGEFSLSLERLSIPEEFVWKGAQPYWRSGPWNGVTFLGIPGNNINNLDGFYLDRSYDNNGTYYLSFNFANQSLLLICVLTDDGNIKDYYWDYVKKNWSIAWIAINSDCDLYGKCGAFGICDRTSEPICSCLPGFEPKNATEWNSQNWSSGCVRKKALQCEDNGFVMLENSKTADFAVWSSPTDYDCRTQCIRNCSCEAYAYDAGIGCMLWAGNLIDIQRFSTGGTDLYIRVPNSDSGKKKNNVTVIVAVTVGVGVIVLVSCIFILWKRTSRKDVDRANSESQGRVQKNELLELSQFEFERLAIATNNFHLSNKLGQGGFGPVYKGTLEDGQEIAVKRLSRASGQGQEEFMNEVLVISKLQHRNLVRLLGCCIERDEKILIYEYMPNRSLDAYMFDPSKQVLSWEKRFAIIEGIARGLLYLHRDSRLRIIHRDLKLSNILLDGELNAKISDFGMAKIFGHTEDEANTRRVVGTFGYMSPEYVMEGLFSEKSDVFSFGVLILEIVSKRKNASFYEDAESLSLIGFAWKLWNDDMITALIDAEIRNVSSVADIMRCIHIGLLCVQELARDRPTMTAVISMLNSETVNLPPPKQPAFMHRQSMLDTDSSSHRTRSDGSYSINYLSLTNMQGR 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00036 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 54 208 IPR036426 -
Stsc60439g00036 803 ProSiteProfiles Bulb-type lectin domain profile. 19 140 IPR001480 -
Stsc60439g00036 803 Gene3D - 13 141 IPR036426 -
Stsc60439g00036 803 PIRSF SRK 1 803 IPR024171 GO:0004674
Stsc60439g00036 803 CDD PAN_AP_plant 332 407 - -
Stsc60439g00036 803 FunFam Receptor-like serine/threonine-protein kinase SD1-8 14 140 - -
Stsc60439g00036 803 Pfam S-locus glycoprotein domain 201 313 IPR000858 GO:0048544
Stsc60439g00036 803 CDD B_lectin 25 143 IPR001480 -
Stsc60439g00036 803 ProSiteProfiles Protein kinase domain profile. 483 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00036 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 559 761 - -
Stsc60439g00036 803 Pfam PAN-like domain 334 392 IPR003609 -
Stsc60439g00036 803 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 743 - -
Stsc60439g00036 803 CDD STKc_IRAK 489 754 - -
Stsc60439g00036 803 ProSiteProfiles PAN/Apple domain profile. 334 407 IPR003609 -
Stsc60439g00036 803 Gene3D Phosphorylase Kinase; domain 1 443 558 - -
Stsc60439g00036 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 446 558 - -
Stsc60439g00036 803 Gene3D Transferase(Phosphotransferase) domain 1 559 761 - -
Stsc60439g00036 803 Pfam Protein tyrosine and serine/threonine kinase 484 753 IPR001245 GO:0004672|GO:0006468
Stsc60439g00036 803 SMART serkin_6 483 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00036 803 Pfam D-mannose binding lectin 64 169 IPR001480 -
Stsc60439g00036 803 SMART blect_4 25 143 IPR001480 -
Stsc60439g00036 803 SUPERFAMILY Protein kinase-like (PK-like) 469 782 IPR011009 -
Stsc60439g00036 803 SMART ntp_6 334 406 IPR003609 -
Stsc60439g00036 803 Pfam Domain of unknown function (DUF3403) 755 803 IPR021820 GO:0004674
Stsc60439g00036 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00036 Stsc-Chr60439 136977 139925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00036 409 798 Receptor kinase-like Gene Family AT4G05200 49.746 5.15e-126 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60439g00036 PK_Tyr_Ser-Thr 5.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00036 - - adu:107468469 1390.56