Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00035 ATGGAGCACTACTACTTCCCCTTTCTTTTTTTACTATTACTACTTTCCTCTTTTTCCATATATCCATATTTTGCCACTTCCTTAGACACCATCACCTCTTCTTATATCCTTAAGCCCCCTCAAACTTTATCCTCCACTGATGGCATCTTCCACCTTGGATTCTTCACCCCTACCACCAACTCATCATCTTCCTATTCTTACCTCGGAATCTGGTACATAACCAACCCTCCTGTCGTCTGGGTTGCTAACAGAGACCAACCTATCATAATAACTCATAATGAAGGGATAGTCCTCAAGATATCCGAAGATGGAAACCTTGTTTTGATGGATACTACACATAATAACAATAACAATAAGATCCTTTGGTCAACAAATGTGTCAAACATAGCATCCCCCAACACCACAACTGCTCAGCTTCTCACCACTGGAAACCTTGTCTTGCAAGAAAACTCCACAGGGAAGATACTGTGGGAGAGTTTCCAACACCCCACAGACACTTTGCTGCAGAACATGAAGATCAGTGCTAACAGGATCACTGGCAAGAAAGTCAAACTAACCTCATGGAGAACTCCTGATGATCCATCCACTGGAGACTTCTCTGTGAGCCTAGAACGCCTTAGTATCCCTGAAGCCTTCATCTGGAGAGGGACTAGTCAACCTCACTGGCGAAGTGGCCCATGGAACGGTCAAATATTCATTGGGGTACCAGACATGATTGCAAACTACATTGATGGCTTTTACATGAGTGGAAAAGATGAAGAGAGCAACGGCACTTACTATCTTTCTTATAGCTATGCAAATCACAATCTAAAGATGTTTGCTTTAGCTTCTGATGGAAACTTGAATGAATTCTACTGGGATTATTCAAAGAAGCAATGGTCCATGATGTGGTCAGTTATAAACACTGAGTGTGGTGTCTATGGCAAGTGTGGACTATTTGCAAGTTGTGACCCTAAAACTTCACCTATCTGCAGTTGCTTGAGAGGGTATGAGCCTAGGAATCCAGAGGAGTGGAAGAAACAAAACTGGAGCAGTGGTTGTGTGAGGAAGATACCTCTGCAGTGTGAGGAAGATGGGTTTGTGAAGATGGAGAATACCAAGGTTCCAGACTATGCTGAGTGGCTTTCTTCTATTGACTTTGACTGCAGAAGTTCTTGTTTGGGAAACTGTTCTTGCAAAGCATATGCTTATGATGCTGGCATTGGTTGTATGCTATGGACTGGAAACTTGATTGACATACAGAAGTTCTCAATGGGAGGAACCGATCTTTACATACGTGTTCCCTCTTCTGAGCTTGATGAGGACAAGAAGAAAAATCATGCCTCAGTGATCATTGCAGTTACACTCTCAGTAGCAGGAACAATTGGGATTGTGATTTGTGCCTTTATCCTGTGGAAAAGAAGAACTTCAATAGGAGAGAGGGCAAATTTCAGAATACCTACAATAAGCAGGATAAAATACCCGGAGCTTTCGCAATTTGAGTTTGAAAAGCTTGCAATTGCAACAAACAACTTTCACTTAACTAATAAGCTGGGGGAAGGAGGTTTTGGACTAGTATACAGGGGAACATTGGAAGATGGACAAGAAATAGCAGTTAAAAGACTTTCAAGTGCATCATGTCAGGGACTAGAAGAATTTATGAATGAGGTGTTGGTAATATCAAAGCTTCAACATCGAAATCTTGTCAGACTTCTTGGATGCTGTATAGAAAGAGATGAGAAGATTTTGATGTATGAATACATGCCAAATAAAAGTTTAGATGCATATTTGTTTGGTTCATGTAAGCAAGAACTAAATTGGGATAAACGTTTTCATATTATTGAAGGAATAGCTCGAGGCTTGCTTTATCTTCATAGAGATTCAAGACTAAGAATTATCCATAGAGATTTGAAGTTAAGCAATGTATTACTTGATGAAGAGCTAAATCCAAAGATTTCAGATTTTGGTATGGCAAAGATTTTTTGTCACACTGAAAATGAAGCAAATACTACCAGAGTTGTTGGAACATAG 2010 0.403 MEHYYFPFLFLLLLLSSFSIYPYFATSLDTITSSYILKPPQTLSSTDGIFHLGFFTPTTNSSSSYSYLGIWYITNPPVVWVANRDQPIIITHNEGIVLKISEDGNLVLMDTTHNNNNNKILWSTNVSNIASPNTTTAQLLTTGNLVLQENSTGKILWESFQHPTDTLLQNMKISANRITGKKVKLTSWRTPDDPSTGDFSVSLERLSIPEAFIWRGTSQPHWRSGPWNGQIFIGVPDMIANYIDGFYMSGKDEESNGTYYLSYSYANHNLKMFALASDGNLNEFYWDYSKKQWSMMWSVINTECGVYGKCGLFASCDPKTSPICSCLRGYEPRNPEEWKKQNWSSGCVRKIPLQCEEDGFVKMENTKVPDYAEWLSSIDFDCRSSCLGNCSCKAYAYDAGIGCMLWTGNLIDIQKFSMGGTDLYIRVPSSELDEDKKKNHASVIIAVTLSVAGTIGIVICAFILWKRRTSIGERANFRIPTISRIKYPELSQFEFEKLAIATNNFHLTNKLGEGGFGLVYRGTLEDGQEIAVKRLSSASCQGLEEFMNEVLVISKLQHRNLVRLLGCCIERDEKILMYEYMPNKSLDAYLFGSCKQELNWDKRFHIIEGIARGLLYLHRDSRLRIIHRDLKLSNVLLDEELNPKISDFGMAKIFCHTENEANTTRVVGT 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00035 669 SUPERFAMILY Protein kinase-like (PK-like) 487 669 IPR011009 -
Stsc60439g00035 669 Pfam D-mannose binding lectin 78 189 IPR001480 -
Stsc60439g00035 669 Pfam Protein tyrosine and serine/threonine kinase 506 660 IPR001245 GO:0004672|GO:0006468
Stsc60439g00035 669 ProSiteProfiles Bulb-type lectin domain profile. 28 160 IPR001480 -
Stsc60439g00035 669 ProSiteProfiles Protein kinase domain profile. 505 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00035 669 CDD PAN_AP_plant 352 428 - -
Stsc60439g00035 669 Gene3D - 23 161 IPR036426 -
Stsc60439g00035 669 SMART blect_4 34 163 IPR001480 -
Stsc60439g00035 669 SMART ntp_6 355 427 IPR003609 -
Stsc60439g00035 669 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 194 IPR036426 -
Stsc60439g00035 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 580 - -
Stsc60439g00035 669 Gene3D Phosphorylase Kinase; domain 1 481 580 - -
Stsc60439g00035 669 Pfam PAN-like domain 355 413 IPR003609 -
Stsc60439g00035 669 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Stsc60439g00035 669 ProSiteProfiles PAN/Apple domain profile. 355 428 IPR003609 -
Stsc60439g00035 669 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 659 - -
Stsc60439g00035 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 581 669 - -
Stsc60439g00035 669 Pfam S-locus glycoprotein domain 222 333 IPR000858 GO:0048544
Stsc60439g00035 669 CDD B_lectin 34 163 IPR001480 -
Stsc60439g00035 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Stsc60439g00035 669 SMART serkin_6 505 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60439g00035 669 Gene3D Transferase(Phosphotransferase) domain 1 581 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00035 Stsc-Chr60439 133573 135938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00035 433 669 Receptor kinase-like Gene Family AT4G23190 50.209 2.82e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60439g00035 PK_Tyr_Ser-Thr 3.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00035 - - adu:107468469 1160.21