Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00033 ATGGTTACCTTCAGATTCCATCAATACCAGGTGGTTGGGAGGGCTCTCCCAACTGAGTCAGATCAGCATCCTAAGATTTACCGCATGAAGCTTTGGGCTACCAATGAAGTTCGAGCCAAGTCCAAGTTCTGGTATTTTCTGAGGAAGCTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTTGCTATCAATGAGATTTTTGAGAAGAACCCAACCAAGATCAACAACTATGGTATCTGGCTGCGCTATCAGAGTCGGACAGGGTACCACAACATGTACAAGGAGTACCGTGACACTACTCTAAATGGTGCTGTTGAGGCCATGTACAATGAGATGGCTTCTCGCCACAGGGTTAGGTTCCCCTGCATTCAAATTATCAAGACTGCCACCATTCCAGCCAAGCTTTGCAAGAGGGAGAGCACCAAACNNNNNNNNNNCAAGATTAAGTTCCCGTTGGTCTTCAAGAAGGTGAGGCCACCAACAAGGAAGCTCAAGACCACGTACAAGGCCAAGAAGCCCAACTTGTTTATGTAA 534 0.4625 MVTFRFHQYQVVGRALPTESDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRFPCIQIIKTATIPAKLCKRESTKXXXXKIKFPLVFKKVRPPTRKLKTTYKAKKPNLFM 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00033 177 PANTHER 60S RIBOSOMAL PROTEIN L18A 3 176 IPR028877 -
Stsc60439g00033 177 SUPERFAMILY RplX-like 71 142 - -
Stsc60439g00033 177 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Stsc60439g00033 177 Gene3D - 1 70 - -
Stsc60439g00033 177 FunFam 60S ribosomal protein L18a 1 71 - -
Stsc60439g00033 177 PIRSF Ribosomal_L18a 1 177 IPR021138 GO:0003735|GO:0005840|GO:0006412
Stsc60439g00033 177 FunFam 60S ribosomal protein L18a 72 147 - -
Stsc60439g00033 177 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Stsc60439g00033 177 Gene3D - 71 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00033 Stsc-Chr60439 131055 132273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00033 1 177 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 88.202 1.12e-115 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00033 K02882 - gmx:100306174 345.51