Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00026 ATGGAGTTTGATCTTGAAGACCCTTTATCCTGCTGCTTCAAGGAACAACAAGCTTACACCATAACAGAACTCTTTGCTTCTGAATCTGATCACATGCCAGCCCCAAACTGCTTGAACTCAACACATTTTCGTGCTTCCTTTCGTTGCGAAGCCATTTCTCTCATACTTCAGGTCCAGTTTTCATGCAATTTGGACCCTTCTGTAGCTTATCTAGCTACAAATTACTTGCACCGCTTCATGTCAAGGCAAGAAATTCCGATTGAGAAGCCATGGTTACTGAAACTTGTTGTCGTATCCTGTCTTTCTCTTGCTTCAAAGATGAAGAACACACCCTTATCAATTTCTGATATACAGATGGAAGGTTATATCTTTGAGGCTCAAACTATTCGGAGGATGGAACTTGTTATTCTCGGGGCTCTGAAATGGCGAATGAGGTCAATTACACCTTTTCCTTTCTTGCATTTCTTCATCTCTTCAGCTGAACTCAAAGATCCATCAATGAAGCAAGTACTTAAAGAGCAAGCTACAAAGATAATCTTCAATGCTCACAGTGACATTAAGCTTTTAGAGTATAAACCTTCAACTATTGCAGCATCTGCTCTTATCGCTGCATCTCGGGAACTATGCTCGCAGCAATGTACTATGCTGAGAGCTTCAATTGCAGCTTGTGAGTATCTAGATGAGGATTCATTGACAAAGTGTATTGACCTCATGCAAGAGATGGTGATGAGGACAGAAGCGAATGAGTCAACCATCGACACAAGCTTTCTAAGCAATGAAACTCCGGTGAGCGTGCTGGAGAGAAGCATCAAGCGGCGGAGAATTTAA 828 0.4191 MEFDLEDPLSCCFKEQQAYTITELFASESDHMPAPNCLNSTHFRASFRCEAISLILQVQFSCNLDPSVAYLATNYLHRFMSRQEIPIEKPWLLKLVVVSCLSLASKMKNTPLSISDIQMEGYIFEAQTIRRMELVILGALKWRMRSITPFPFLHFFISSAELKDPSMKQVLKEQATKIIFNAHSDIKLLEYKPSTIAASALIAASRELCSQQCTMLRASIAACEYLDEDSLTKCIDLMQEMVMRTEANESTIDTSFLSNETPVSVLERSIKRRRI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00026 275 PIRSF Cyclin_A_B_D_E 2 269 IPR046965 GO:0016538|GO:0044772
Stsc60439g00026 275 PANTHER CYCLINS 31 245 IPR039361 -
Stsc60439g00026 275 SMART cyclin_7 53 138 IPR013763 -
Stsc60439g00026 275 FunFam D6-type cyclin 143 236 - -
Stsc60439g00026 275 Pfam Cyclin, C-terminal domain 147 251 IPR004367 -
Stsc60439g00026 275 Gene3D - 23 236 - -
Stsc60439g00026 275 FunFam D6-type cyclin 33 142 - -
Stsc60439g00026 275 Gene3D - 34 145 - -
Stsc60439g00026 275 Pfam Cyclin, N-terminal domain 22 144 IPR006671 -
Stsc60439g00026 275 SMART Cyclin_C_2 147 269 IPR004367 -
Stsc60439g00026 275 SUPERFAMILY Cyclin-like 128 245 IPR036915 -
Stsc60439g00026 275 SUPERFAMILY Cyclin-like 19 144 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00026 Stsc-Chr60439 101443 103032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00026 1 268 Core Cell Cycle Gene Families AT4G03270 45.196 1.13e-65 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00026 K18812 - gmx:100799985 362.073