Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00021 ATGCTGCTTCCTGTACTGAAACAAATAAGTGAAGATCAGCATATTGAGCTGGAAACAGAAGCGAAAATCAAAGGGAAAACAGTCACTGATATTCTCATCAAGCAGGTCGAATTCGGCCGCAATGAGAAGAATTACTGCAATCACTGCGAAACATCCATCCTTGATCTTCATAGAAGCTGCCTTAGTTGTTCCTATAGTCTTTGCTTAAGTTGTTGTCAGGAATTAAGACAAGGAAGAACCTCAGAAGAAGTTAGCTCTTCTGTCTCCAAGCCACCTGACGAAATGAGCAGTTGTACTGCTGGTGAAAAGCAACTTTTGGATGATGAGGCCATTTTACGCGAAAACTCAACTGGCTATTCAATGTTGCCTGAATCGTCTGGGTTTGATGGTACATATGATGTATCATGTCCACCTACGGAGTTTGGTGGTTGTGGTGATAGCCATCTTGATTTGAGATGTGTCTTCCCCTTAAGCTGGATTAAAGAGATGGAAGTAAAGGCAGATGAAATAGTTTGCAGCTATGAATTTCCGGAAATTTTGGATAAAAGTTCATCCTGCTCACTGTGTATTGACAGAGATCAGAAGCTGCAAAAAGCAGCTCAAAGAGAAGATTCTAATGATAATTGCTTGTTTTATCCTACGGTTTCGGACATTACTAGTGATCATTTTGAACACTTTCAGAAACACTGGGGGAAGGGCCATCCTGTAATAGTGCAAGATGCACTTAAGAGTACTTCAAACCTCAGTTGGGATCCACTGGTCTTGTTCTGTGCTTATCTTGAGAGGAGCATTACAAGATATGAGAATAATAAGGACTTACTGGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATCAATATTAGGCAGTACTTTGCTGGGTCTCTCAAAAGTCAGCCACAGAGAAACGCTTGGCATGAGATGTTGAAAATAAAAGGCTGGTTGTCGTCCCAGCTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGCAATAATTGATGCTATACCAATTCCAGAATACATGAATCCCATGTCTGGTTTCCTGAACTTAGCTGTAAATTTGCCACAGGGGACTACAAAACATGACATGGGACCATATGTCTATATCTCATATGACTGTGCTGATGAAGAAACGGATTCTGTGACCAAACTCTGTTACGATTCATATGATTTGGTTAACATTATGGCACATACCACAGATGTCCCTCTGTCTGCAGAACACCTTATTAAAATACGCAGATTATTGAAAAAGCACAAAGCTCTATGTCAAAGGGAGTCTTACAAAGTTACTGCTGAGCATGCTGAAGAAACAGAACAAAATGAAGACCAAGGTGTGGTAAGAGAAGGAATGGACTTCTTCAGGAGAGTCAATAGAATATCTTCTATCCCCGCTGAAGCTAGAACAAAAACTAATCAGAGTTTAGACACCGAAATATCCGGAAGTGGAGAATGTGATATAATTTCTGATGCTGGAAAAGAGCAAAGCTCTTCACCTATTGACAGGACAATTAAAAGCACTGAAATGTCTCCAGACCATGATAATCCTAGAAGTACCTTTGAAAATCTGAACAGTGATAAAAGCAAGGTTACTGAGGATTCTGGTGCTCAGTGGGATGTCTTTCGGAGAGAAGATGTGCCAAAGCTCTTGGAATACCTCAAAAGGCATCGTAATGAATTTTCTTATAGCCATGAATACCAAGAGGAGATGGTTCATCCAATTCTTGATCAGAGTTTCTATCTCAACAATTCTCACAAAATGAGACTTAAGGAGGAGTTTGAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTTATCATTCCTACTGGATGTCCATATCAGATTCGGAATCCTAAGTGTTCTGTTCATGTGGTATTGGAATTTATTTCCCCCGAGAATGTTTCTGAAAGCATCCAATTGATTGACGAGGTTCGTCTGCTTCCAAAAGACCATATAGCAAAAGTAGACAAGCTTGAGGTGAAGAAGATGGCCCTCTATAGCATGAATACAGCAATCAAAGAAATATGTGACTTTACAAGCAAGACTTGA 2052 0.4016 MLLPVLKQISEDQHIELETEAKIKGKTVTDILIKQVEFGRNEKNYCNHCETSILDLHRSCLSCSYSLCLSCCQELRQGRTSEEVSSSVSKPPDEMSSCTAGEKQLLDDEAILRENSTGYSMLPESSGFDGTYDVSCPPTEFGGCGDSHLDLRCVFPLSWIKEMEVKADEIVCSYEFPEILDKSSSCSLCIDRDQKLQKAAQREDSNDNCLFYPTVSDITSDHFEHFQKHWGKGHPVIVQDALKSTSNLSWDPLVLFCAYLERSITRYENNKDLLEACLDWCEVEINIRQYFAGSLKSQPQRNAWHEMLKIKGWLSSQLFKEQFPAHFAAIIDAIPIPEYMNPMSGFLNLAVNLPQGTTKHDMGPYVYISYDCADEETDSVTKLCYDSYDLVNIMAHTTDVPLSAEHLIKIRRLLKKHKALCQRESYKVTAEHAEETEQNEDQGVVREGMDFFRRVNRISSIPAEARTKTNQSLDTEISGSGECDIISDAGKEQSSSPIDRTIKSTEMSPDHDNPRSTFENLNSDKSKVTEDSGAQWDVFRREDVPKLLEYLKRHRNEFSYSHEYQEEMVHPILDQSFYLNNSHKMRLKEEFEIEPWTFEQHVGEAVIIPTGCPYQIRNPKCSVHVVLEFISPENVSESIQLIDEVRLLPKDHIAKVDKLEVKKMALYSMNTAIKEICDFTSKT 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00021 683 ProSiteProfiles JmjC domain profile. 342 646 IPR003347 -
Stsc60439g00021 683 Gene3D Cupin 212 655 - -
Stsc60439g00021 683 SUPERFAMILY Clavaminate synthase-like 215 666 - -
Stsc60439g00021 683 SMART cupin_9 323 646 IPR003347 -
Stsc60439g00021 683 MobiDBLite consensus disorder prediction 489 503 - -
Stsc60439g00021 683 Pfam JmjC domain, hydroxylase 533 625 IPR003347 -
Stsc60439g00021 683 MobiDBLite consensus disorder prediction 466 529 - -
Stsc60439g00021 683 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 679 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00021 Stsc-Chr60439 77966 81834 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc60439g00021 JmjC 3.1e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00021 K15601 - gmx:100802129 982.63