Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00014 ATGGGGAGAGCACCTTGTTGTGACAAGAATGGCCTCAAGAAAGGGCCATGGACACCCGAGGAGGACCAAAAGCTTGTTGATTATATTCAAAAACATGGTTATGGAAACTGGAGGACTCTTCCAAAGAATGCCGGGTTACAAAGATGCGGAAAGAGCTGCCGTCTACGGTGGACAAACTATCTCCGGCCAGATATAAAGCGAGGGCGGTTCTCATTTGAAGAGGAAGAGACGATCATTCAACTACATAGCATTCTTGGCAACAAATGGTCTGCAATTGCATCTCGGCTACCAGGAAGAACAGATAATGAAATAAAGAATTATTGGAACACACACATCAGGAAGAGGCTTCTGAGAATGGGAATTGATCCTGTCACACACACTCCAAGGCTTGATCTCTTGGACCTCTCTTCCATTCTAATTCATCATCATCACAACAATTCATCATCATTATCATCACCAATCAACTCCATGCTCAACCCTCAGCTTCTAAAGTTAGCTTCCTCAATCATTTCTTCTCATAATGAAAACCTTGAATTCACTACTACTACTTATCATCATCATCATGATCCTCAAATTCAGAACCAAAACCCAACACCACCACAACAACAACACTTTGTTCAAATTCAAGAGGCCGTGAATAACACAAGTTCTTGTGTCTCATTGCCACCTTTGATTGAACCAAACAATAATAATATGAACACATACCCATTGAATAATCTCAGCGACCATAATTGGGACACAAATGGAATTGCTTTAACAGAAGAAGACTATGTCCCTCAATTATCGAGCTATGATTACTATAGTTCTGATAATCATCATCTAATGGACCCTTCATTATTGTCAGAAGCTTCAACAACTTTCCATTCAAATAGTAATAATAACTTGAGCTTTGCTGCTTCGGTTATGTCAACACCTTCTTCTTCAAGCCCCACAACGTTGAATAATAATTCGAACTCAACCACGACGACGACCCACATCAATGGCAGCAGCAGCACCGAGGATGAGAGTGACAGCATGTTGAGATTTGAAATCCCAGATGTTTTGGATGTCACTCAGTTTTGTGATAATCATAATGTTATTGTTTCAGATTATTATTATTAA 1101 0.3996 MGRAPCCDKNGLKKGPWTPEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDLSSILIHHHHNNSSSLSSPINSMLNPQLLKLASSIISSHNENLEFTTTTYHHHHDPQIQNQNPTPPQQQHFVQIQEAVNNTSSCVSLPPLIEPNNNNMNTYPLNNLSDHNWDTNGIALTEEDYVPQLSSYDYYSSDNHHLMDPSLLSEASTTFHSNSNNNLSFAASVMSTPSSSSPTTLNNNSNSTTTTTHINGSSSTEDESDSMLRFEIPDVLDVTQFCDNHNVIVSDYYY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00014 366 CDD SANT 69 112 IPR001005 -
Stsc60439g00014 366 FunFam MYB-related transcription factor 13 66 - -
Stsc60439g00014 366 SMART sant 66 114 IPR001005 -
Stsc60439g00014 366 SMART sant 13 63 IPR001005 -
Stsc60439g00014 366 CDD SANT 16 61 IPR001005 -
Stsc60439g00014 366 FunFam Transcription factor MYB39 69 130 - -
Stsc60439g00014 366 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc60439g00014 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc60439g00014 366 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc60439g00014 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 290 - -
Stsc60439g00014 366 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc60439g00014 366 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc60439g00014 366 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc60439g00014 366 Gene3D - 13 66 - -
Stsc60439g00014 366 MobiDBLite consensus disorder prediction 300 335 - -
Stsc60439g00014 366 Gene3D - 69 116 - -
Stsc60439g00014 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Stsc60439g00014 366 MobiDBLite consensus disorder prediction 300 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00014 Stsc-Chr60439 54520 55977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00014 1 353 MYB Transcription Factor Family AT4G21440 52.770 5.82e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60439g00014 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00014 K09422 - cave:132170888 356.295