Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60439g00007 ATGACGAGTTTCGCTTTCTTCCGCCGGCTTTCTAAATCATTCCACGACCATCCCTCGCATGTTAAGCTCATCCTCATCTGCACCACCGTAACTGGTGGTGGCCTTTTGGCTTACAGTGATGCAGGTTCTTCAGCAGCTGAAGTTGCGGTTACGGAGAGGAAAAAGGTGGTGGTGCTGGGAACTGGTTGGGCGGCGACTAGCTTCTTGAAGAATCTAAACAATCCGAAATATGAGGTGCAGGTGGTTTCGCCGCGTAACTATTTTGCCTTCACTCCTCTTCTGCCTAGCGTTACGTGCGGCACCGTCGAAGCTCGAAGCATTGTTGAACCCGTTCGTAATATTGCTAACAAGAAGAGAGTGGACGTTCTATTCAACGAAGCAGAGTGTGTCAAGATTGATGCTGAAAACAGAAAAGTATATTGTCGATCTAATTCAAACAACAATTTGAATGGACAAGAAGAATTTGTTGTGGACTATGACTACCTAATCATAGCCGTCGGAGCTAATGTCAACACATTTAATACTCCAGGAGTTGTGGAGAATTGCCATTTCTTGAAGGAGGTTGAAGATGCTCAGAAGATTAGAAGAACTGTTATTGACTGTTTTGAGAGGGCAAATTTACCCAATTTAAGTGAAGAAGAGAAGAAGCGAATTCTTCATTTTGCTATTGTTGGAGGTGGCCCAACTGGGGTGGAATTTGCCGCCTCACTTCATGACTTTGTCAAGGAGGATATGATAAAATTATATCCGGGAATTAAAGATTTGGTTAAAATTACTCTTTTGGAGGCAGGGGATCATATATTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTTCAAAGAGAAGGGATCGATGTGAAAACAGGATCCATGGTTGTGAAGGTAACTGATAAGGAGATTTCCACTAAAGAACTGAAGAATGGAGGAGAAATTAAGGCAATTCCATATGGAATGGCTGTCTGGTCAACTGGCATTGGCACTCGTCCATTCATTAAAGATTTCATGGCGCAAATTGGTCAGGCTCGCAGGCGTGCCTTAGCTACTGATGAATGGTTGAGAGTTGAGGGTTGCGACAATGTGTATGCGCTCGGTGATTGTGCTACCATCAACCAGCGAAAAGTCATGGAAGATATTGCTGCAATCTTTAAGAAGGCTGACAAAGACAATTCAGGAACTCTAACGGTGAAAGAATTTCAAGAGGTCATGAATGACATTGTCGAAAGATACCCTCAGGTGGAGTTGTATCTCAAGACTAACCAAATGCGCGACATCTCTGATCTATTGAAGTCAGCCAAAGGAGACGTTAAGAAAGAATCAATTGAACTCAACATCGAGGAACTCAAAGCAGTACTCTCCAAAGTGGATTCCCAGATGAAATTCCTTCCTGCTACAGCTCAAGTTGCATCTCAGCAAGGCACTTACCTTGCCAAGTGTTTCAACCGGATGGAAGATTGTGAAAAGAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATCGCTTCAAGCCCTTTAGGTACAAGCATTTGGGTCAATTCGCTCCATTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGCCACAGCAGTCAATGGCTATGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAGGGCCTTGGTAGTTTCAGACTGGACAAGACGGTTTGTCTTTGGAAGGGACTCAAGTCGCATATGA 1740 0.446 MTSFAFFRRLSKSFHDHPSHVKLILICTTVTGGGLLAYSDAGSSAAEVAVTERKKVVVLGTGWAATSFLKNLNNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIANKKRVDVLFNEAECVKIDAENRKVYCRSNSNNNLNGQEEFVVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPNLSEEEKKRILHFAIVGGGPTGVEFAASLHDFVKEDMIKLYPGIKDLVKITLLEAGDHILSMFDKRITAFAEDKFQREGIDVKTGSMVVKVTDKEISTKELKNGGEIKAIPYGMAVWSTGIGTRPFIKDFMAQIGQARRRALATDEWLRVEGCDNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVMNDIVERYPQVELYLKTNQMRDISDLLKSAKGDVKKESIELNIEELKAVLSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEDCEKNPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFVFGRDSSRI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60439g00007 579 Gene3D - 424 578 - -
Stsc60439g00007 579 Gene3D - 45 423 - -
Stsc60439g00007 579 SMART efh_1 381 409 IPR002048 GO:0005509
Stsc60439g00007 579 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 423 578 - -
Stsc60439g00007 579 SUPERFAMILY FAD/NAD(P)-binding domain 214 374 IPR036188 -
Stsc60439g00007 579 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 379 IPR023753 GO:0016491
Stsc60439g00007 579 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 44 406 - -
Stsc60439g00007 579 Pfam EF hand 382 408 IPR002048 GO:0005509
Stsc60439g00007 579 Coils Coil 441 461 - -
Stsc60439g00007 579 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Stsc60439g00007 579 PANTHER NADH DEHYDROGENASE 48 579 IPR045024 GO:0003954|GO:0006116
Stsc60439g00007 579 SUPERFAMILY EF-hand 370 466 IPR011992 -
Stsc60439g00007 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Stsc60439g00007 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Stsc60439g00007 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Stsc60439g00007 579 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Stsc60439g00007 579 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60439g00007 Stsc-Chr60439 24712 28379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60439g00007 1 579 Chloroplast and Mitochondria Gene Families AT4G21490 74.099 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60439g00007 K03885 - gmx:100802661 1025.39