Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60438g00005 ATGACTAGGCGCTCCAGTCGCACAATTTATGTTGGCAATCTTCCTGGCGATGTTCGCTTGAGGGAAGTAGAGGATCTTTTCTACAAGTTTGGTCCTATTGTTGACATTGATTTGAAGATTCCTCCAAGGCCACCCGGTTATGCCTTTGTGGAGTTTGAGGATATCCGTGATGCTGAAGATGCCATTTACTATAGAGATGGTTACAACTTTGACGGTTTTCGGTTACGGGTTGAACTTGCACATGGTGGACGGGGTCATACATCCTCAGTAGACCGTTACAGCAGTTATAGCGGTAGTAGTAGTAGCCGCGGAGTTTCCAGGCGCTCTGACTATCGTGTTCTGGTCACAGGATTACCACCTTCTGCTTCATGGCAAGACCTGAAGGATCATATGCGAAGAGCTGGTGATGTGTGTTTTTCTCAAGTCTTCCGTGAGCGTGGTGGCATGACTGGGATAGTGGATTATACAAATTATGACGATATGAAATATGCTATAAGGAAACTTGACGACTCTGAATTCAGAAATGCCTTTTCTCGGTCATACATACGGGTCAGGGAATATGATCGCCGGAGTTATTCTAGAAGCCCCAGTTGTGATTCAAGGAGGAGCTATTCTAGAAGCCTCAGCCGCAGTCCATATGTGTCACGAAGTCGAAGCTATAGTCGAAGCCCTAGCTATAGTGACAGGAGCAGAAGTTGGTCTCCAAAACCAAAGCGCTCTCGGCGTTCGTTCTCTCGCTCAAGCGAAATGCTGTCCCCTAGACCTATCAGCAATTAA 777 0.4672 MTRRSSRTIYVGNLPGDVRLREVEDLFYKFGPIVDIDLKIPPRPPGYAFVEFEDIRDAEDAIYYRDGYNFDGFRLRVELAHGGRGHTSSVDRYSSYSGSSSSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSYIRVREYDRRSYSRSPSCDSRRSYSRSLSRSPYVSRSRSYSRSPSYSDRSRSWSPKPKRSRRSFSRSSEMLSPRPISN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60438g00005 258 CDD RRM2_SF2_plant_like 111 186 - -
Stsc60438g00005 258 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Stsc60438g00005 258 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Stsc60438g00005 258 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Stsc60438g00005 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Stsc60438g00005 258 SMART rrm1_1 112 183 IPR000504 GO:0003723
Stsc60438g00005 258 SMART rrm1_1 8 78 IPR000504 GO:0003723
Stsc60438g00005 258 MobiDBLite consensus disorder prediction 88 105 - -
Stsc60438g00005 258 Gene3D - 110 188 IPR012677 -
Stsc60438g00005 258 MobiDBLite consensus disorder prediction 197 231 - -
Stsc60438g00005 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Stsc60438g00005 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Stsc60438g00005 258 MobiDBLite consensus disorder prediction 84 105 - -
Stsc60438g00005 258 Gene3D - 2 109 IPR012677 -
Stsc60438g00005 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Stsc60438g00005 258 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 248 - -
Stsc60438g00005 258 MobiDBLite consensus disorder prediction 192 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60438g00005 Stsc-Chr60438 33484 39505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60438g00005 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 2.22e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60438g00005 K12890 - gmx:100794282 326.25