Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60437g00010 ATGGAGGAGGATTATTCATGGGAGCATTGGCATCTTCAAATGGAAATGGATCATGAGAAGAGCAATAATAATATTAATTTATTATTAGAAAATGAATATGGTGATGGTGTAGATGTTGATGATGATAATAATGAAGAAGATGATGATGTGTTCTTAAGAGAAATCTTAATGTTACAACCATCTCTCTCTTCTGATCAAAATAGTGAAAATAATAATGATGACCACCATCATCATCATCATCTAATAAATTCTTCTTCTTCCACACCTATTCTCCAAACCACCACCACCGTTGGATCATCAAAAGAGATTGAAGTTCCACAAGATCTAACGGTTGAGAACAACAACAAGAACAAGAAGAAGAAGAACAATGGTAGATCATCATCTTCTTCTCCAAGGAGATACATTTTGTCATTTGATAACTCAACCATGACACCAGCTACCCCAAATCAATTACAAGAAGACCCTTCTTATTATTATGATAATAATAATAATAATAATAATAATAATAATAAGAACAAGAGGAAGAAAGAGCAATCACCAACAACAACATGTGGTGATGATTATTCTCCGAAATTGTCTTCTTCTTCAAAAAGGGCCATGCCCGTTAATAATAATAATAATAAGGAGGAGGAGGAAGAAGGGGGAATAATAACAACAAAAAGGGCAAGAAGCTCTTCACAAACAATGGATCACATAATGGCAGAGAGAAAGAGGAGACAAGAACTCACTGAGAAGTTCATAGCACTTTCAGCTACCATCCCTAACTTGACTAAGACAGACAAGGCATCAATACTAAGAGCAGCCATAGATTATGTGAAGCAACTTCAAGAAAGGGTGCAAGAACTAGAAAAGGAAGAAAATAAGAGGAGCAGAGAGTCATCAGTGATATTGGTGAAGAAATCAAATAATAATAATAATAATAATAATAATGGTGATGAATTATTAATGGAAGAGAGCACAATAATATCAAGTGAAACAAGAAGAAGAAGTCATGATGATGATGAAAATGGTGGAATGGTTCTGCCTGATATTGAAGTAAGAGTTATGGGGAAAGATGTTCTGATTGAGATACACTGTGAGAAAGAGAATGGGATTGAGATGAAAATACTTAACCAGCTTGAAAATCTTCATCTTTTTGTCACCAGTAGTAGTGTTCTTCCTTTTGGCAATTCTGCTCTTGGGATTACTATTATTGCTAAGATGGGAGATTCGTGCGAAATGAGAGTGAATGATGTGGTGAAAAACATTAGGCGAGTGTTCTTGAAGAAGCCACATCACATGGCCTTGAACAAGTGA 1296 0.3511 MEEDYSWEHWHLQMEMDHEKSNNNINLLLENEYGDGVDVDDDNNEEDDDVFLREILMLQPSLSSDQNSENNNDDHHHHHHLINSSSSTPILQTTTTVGSSKEIEVPQDLTVENNNKNKKKKNNGRSSSSSPRRYILSFDNSTMTPATPNQLQEDPSYYYDNNNNNNNNNNKNKRKKEQSPTTTCGDDYSPKLSSSSKRAMPVNNNNNKEEEEEGGIITTKRARSSSQTMDHIMAERKRRQELTEKFIALSATIPNLTKTDKASILRAAIDYVKQLQERVQELEKEENKRSRESSVILVKKSNNNNNNNNNGDELLMEESTIISSETRRRSHDDDENGGMVLPDIEVRVMGKDVLIEIHCEKENGIEMKILNQLENLHLFVTSSSVLPFGNSALGITIIAKMGDSCEMRVNDVVKNIRRVFLKKPHHMALNK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60437g00010 431 SMART finulus 232 281 IPR011598 GO:0046983
Stsc60437g00010 431 Coils Coil 265 292 - -
Stsc60437g00010 431 MobiDBLite consensus disorder prediction 182 203 - -
Stsc60437g00010 431 Pfam Helix-loop-helix DNA-binding domain 230 276 IPR011598 GO:0046983
Stsc60437g00010 431 Gene3D - 224 296 IPR036638 GO:0046983
Stsc60437g00010 431 MobiDBLite consensus disorder prediction 63 216 - -
Stsc60437g00010 431 MobiDBLite consensus disorder prediction 83 112 - -
Stsc60437g00010 431 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 295 IPR036638 GO:0046983
Stsc60437g00010 431 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 275 IPR011598 GO:0046983
Stsc60437g00010 431 MobiDBLite consensus disorder prediction 127 169 - -
Stsc60437g00010 431 PANTHER BHLH TRANSCRIPTION FACTOR 63 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60437g00010 Stsc-Chr60437 53231 58285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60437g00010 172 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.400 1.49e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60437g00010 HLH 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60437g00010 - - ahf:112779544 432.18