Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60437g00007 ATGAACCCAAATTTGCCAAATGACAAAGTGATTGATGAGTCTTGTTGGTCTGATAAAGAATATTGCAGAAAATCCAATAACTGGTATTGCTTCTCCAAGACGGAGGCGGAAGAGCAGGCCCTAGACTTTGCTAAAAGAACCGGGCTTGATGTGGTGAGCATTTGTCCTACCCTTGTTCTGGGACCGATTTTGCGGTCATCTATTGTGAATGCAAGTAGCTTGGTTCTCCTCAAGATTTTGAAAGGTTGTGAATCATTGGAGAACAGACATCGTTGGATAGTTGACGTGCGAGATGTAGCCGATGCAATTCTTTTGGCTTATGAAAAGCCTGAAGCAGAAGGGAGATATATATGCACTTCACACCCGGTTATGGCAAAGGAGTTGGTGGAGAAATTGAAGAATAAATATCCAAACTACAACTACCCTACAAACTTTATTGAGGTTGATGATCATCAAACAAAGTTAAGTTCAGAGAAACTACAGAGGCTTGGTTGGAGATACAGGCCATTGGAGGAGGCACTCACTGATTCTGTTGAGAGCTACAAGGAAGCTGAAAATCAAGATCAAAGGGTCAAGAAGATGGAAGTTAGGACAGTTGATATTCCTGATGAATGCTGGGATTTAGTCTTTAGATTCCTCGATGACGGCCGCGATTTGGGATCCGTGTCGATGGTCTGCAAGCTTTTCCTTTCAATTTCAAACCAAATTCAGCATTCTCTTAAAATATTTGATCAAACAGTTGAGCTCATTCCTAACCTGTTCTTGAGGTTCCCAAAGCTCAAAGTATTAGACCTCAGTTACTTCAATGGCAATCTTGAAGGCCTACTCAATCAGATTTCGCAATCCGGGTTGGAACTTGATTCTCTTAATCTTTCCAATCAGATGAAGCTTCCAATTGAAGGCATCCGGGAACTCGGTTTGGCAATGAAGAATTTGAGGGTGTTGATCTGCTCAAACATTGGTTCTTTGGATGATAGGGATTTGGAGGTCATGGCAACTTGTTTTCAATTGCTTCAAGAGCTTGACATTAGTTTCCCATTGGATTCTCAAGCATCAGATTTCGGGATATCGAAGCTGTCTTTAAGGCTTGAGAATCTGCAAAAGATTAACCTCTCTGGTAATCACTTGATCACTGATCAATCACTATTTGCTCTGTGCAGAAACTGTATGTCATTGGAAGAGGTTTTATTCCAGTCCTGTTTCAGAATAACCCAATCAGGCATTGCTTCTGCTATTCGCCTTCGGTCGAATTTGTCTTCCATAGCTTTCAACATTGAAAAGAAAAGAATTCATGGACATGGTTTGACACCTATGCCAATTAACCAGGATTTGGTTGATGCACTCAAGAGCCTGGAAAGGCTAACTGCTATTGATTTGTCAAATTCTTTCATCTCGGACGAGTTGCTCTCTTCGATCTCAGAAGGTTGTCACAATCTGAAGAAACTTGTCCTCCAAGGCTGCTGCAATTTCACAGTTGCTGGAATCTCTTGTCTGCTATCAAAGTGTCAATATGTTGAGTCTCTGGATCTTGGAAAAGCTGACTTCCTAACAGATCAATGCATCACCAAGCTTTCCATGTTTCTTCTTAATGTGACCTCTATAAACCTCAGTGGCTGTTGCCAGCTTACAAATTCAGCATTCTTCACACTCACAAGAAACTGTAATCTTCTTACTGAGATCAGAATGGAGAGAACATATCTTGGGGTAAAAGGAAATGAACAAGAAGAAGAGGATCCTTCACTTGATCTTGTTCCAAACCCTCAAGTGAAAACTCTCTATTTGGGTCACAACATTCTACTTGATGATGAAACTTTGTTTAAAATCACTTCCATTTGCCCCAATGTGGAGCTTCTTGACTTGAACTCTTGCAGCAGCATATCCGAAGAATGTATCGCCGAGGTTCTTAAGACGTGTCGCGAGATAAGGCACTTAAGCTTAGCCTATACAAAAGTGAAGCTGTTAAGTATAGACTCTCAAGTATCACAAATGAAGGTGTTGAACTTGTCAGGGTCAGGAATTGGTGATGATACACTCTCAGTGATCTCAAAATGGTTCTGTGGATTAGTATCTCTGGAGATTCAGAATTGCAGTGATGTAACCACAAAAGGGGTGAGGGAAGTAGTGGAGAATTCCATGGGATTGAGAGAGTTGAATATGAAGAACTGTGATCTGGTGAGTGATGAGTACATTGCCACCTTGGAGTTTTCAAAACCATCATTGAGGAAAATAATCAAACACATTGTGGGCGTTGCTGCTGATTATTACTGA 2268 0.4109 MNPNLPNDKVIDESCWSDKEYCRKSNNWYCFSKTEAEEQALDFAKRTGLDVVSICPTLVLGPILRSSIVNASSLVLLKILKGCESLENRHRWIVDVRDVADAILLAYEKPEAEGRYICTSHPVMAKELVEKLKNKYPNYNYPTNFIEVDDHQTKLSSEKLQRLGWRYRPLEEALTDSVESYKEAENQDQRVKKMEVRTVDIPDECWDLVFRFLDDGRDLGSVSMVCKLFLSISNQIQHSLKIFDQTVELIPNLFLRFPKLKVLDLSYFNGNLEGLLNQISQSGLELDSLNLSNQMKLPIEGIRELGLAMKNLRVLICSNIGSLDDRDLEVMATCFQLLQELDISFPLDSQASDFGISKLSLRLENLQKINLSGNHLITDQSLFALCRNCMSLEEVLFQSCFRITQSGIASAIRLRSNLSSIAFNIEKKRIHGHGLTPMPINQDLVDALKSLERLTAIDLSNSFISDELLSSISEGCHNLKKLVLQGCCNFTVAGISCLLSKCQYVESLDLGKADFLTDQCITKLSMFLLNVTSINLSGCCQLTNSAFFTLTRNCNLLTEIRMERTYLGVKGNEQEEEDPSLDLVPNPQVKTLYLGHNILLDDETLFKITSICPNVELLDLNSCSSISEECIAEVLKTCREIRHLSLAYTKVKLLSIDSQVSQMKVLNLSGSGIGDDTLSVISKWFCGLVSLEIQNCSDVTTKGVREVVENSMGLRELNMKNCDLVSDEYIATLEFSKPSLRKIIKHIVGVAADYY 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60437g00007 755 Gene3D Ribonuclease Inhibitor 332 422 IPR032675 -
Stsc60437g00007 755 SUPERFAMILY F-box domain 199 234 IPR036047 GO:0005515
Stsc60437g00007 755 SUPERFAMILY RNI-like 239 732 - -
Stsc60437g00007 755 Gene3D Ribonuclease Inhibitor 579 652 IPR032675 -
Stsc60437g00007 755 Gene3D Ribonuclease Inhibitor 653 752 IPR032675 -
Stsc60437g00007 755 Gene3D - 198 235 - -
Stsc60437g00007 755 PANTHER UNCHARACTERIZED 200 510 - -
Stsc60437g00007 755 Gene3D Ribonuclease Inhibitor 423 568 IPR032675 -
Stsc60437g00007 755 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 189 IPR036291 -
Stsc60437g00007 755 Gene3D - 1 197 - -
Stsc60437g00007 755 FunFam F-box/LRR-repeat protein 4 434 568 - -
Stsc60437g00007 755 SMART LRR_CC_2 389 414 IPR006553 -
Stsc60437g00007 755 SMART LRR_CC_2 451 475 IPR006553 -
Stsc60437g00007 755 SMART LRR_CC_2 612 637 IPR006553 -
Stsc60437g00007 755 SMART LRR_CC_2 685 710 IPR006553 -
Stsc60437g00007 755 SMART LRR_CC_2 528 553 IPR006553 -
Stsc60437g00007 755 SMART LRR_CC_2 586 611 IPR006553 -
Stsc60437g00007 755 SMART LRR_CC_2 363 388 IPR006553 -
Stsc60437g00007 755 SMART LRR_CC_2 476 501 IPR006553 -
Stsc60437g00007 755 SMART LRR_CC_2 502 527 IPR006553 -
Stsc60437g00007 755 SMART LRR_CC_2 711 733 IPR006553 -
Stsc60437g00007 755 Pfam NAD dependent epimerase/dehydratase family 21 113 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60437g00007 Stsc-Chr60437 36173 42021 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60437g00007 1 185 Monolignol Biosynthesis Gene Families AT2G33590 60.753 2.16e-72 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60437g00007 K10268 - gmx:100811565 686.026