Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60436g00009 ATGCCCCCCCGTGCTCCCTCCACCTCAGCATTGCCGTCGAAGCCAACCTCTATTCCACCCAAATTCTGGCGCGCCTGCGCTGGAATCTCGGCGCAGGAGCCACCAATCGTGAACTCTAGGGTTTACTACTTTCCACAAGGACACATCGACCAAGCTGCATCCGAACCACAAAACCTTTCACCTCTAGTTTACTCCACGCCGTTCATCCATTGCCGTGTCTCCGCCGTCAACTTCTTCGCCGATCCTAACACCGACGAGGTCTTTCTCAAGATTCTTCTACGTCCTGTCGCTGGATTAGCTCAAGATTTTCCTCCTATTGCCGACGCCGCCGAAGGAAATGGCGACGATGAAAAGGTTGAGTCGTACGCCAAGGTTCTCTCGCTATCCGACGCCGACAACAGAGGAGGGTTTTCGGTGCCGAAGTCCTGCGCGGAAATGATCTTCCCGCCTCTGAACTCTGAAGACGAAATACTGCCGCAGACGTTTAGCATGACCGACCTCCACGGCACCGCTTGGGAGTTCCGCCACATCTACCGCGGGACGCCGAAGCGGCACCTCTTCACTACTGGCTGGAAGAACTTCGTCGACAGCAAGATTCTTATCTCCGGCGATACTCTGATCTTCATGAAGGACACCGATGGGAAGGTGTTCGTCGGGATCCGCCGTAATATGTCGCTGGACGAGGGGGAAAAGGGAAAAGAAGAGGTGGTGATGTCGGAGGGGTTTGCAAGGAAACAGAAGGGGAGGGTGAGTTCGGCGTCGGTGGCGAAGGCTATGGAGCTGGCGGCGCAGAACAAGCCGTTCGAAGTTGTTTACTATCCGAACGTGGGGTGGGGGGAGTTTGTGTTGATGGCTGAGGATGTGGAGGTGAAAGTGAATGATATTCTTTGGCGTGTTGGGATGAAAGTACTAGCGAAGATTAGAGCGACCTTCGATTCTTCTTACACGACTAGCTTCTATGGAACTGTTTCTGGTGTTTCTGTTCCCGCTAATGATCAACCGTGGAGCGGTTCTCCTTGGCGCATGCTTCAGATCACATGGAATGATACTGGAATGTTGAAGAAGGCAAATTTCGTCAGTCCATGGCAGGTGGTGGAGCTTCTTTCTGATGCACCTTCAGTTCCTGCTGCACTAGTTCCCCCAACAAAGAAGTTTAGAACTACTGATGGAGAGGAAGAACCCTTCCTTTCTAGGCCAACATTCCCTATTCCAGATTCAGCAAAGGGATTGTTGAAAGAAGTATTACTGAGTTGCTATGGTAAAACTTCTCCTGCTGGCATGCAGGGACAGGGAGCCAGGCATGATGTCTCTGCTACTCCAACTTGTCCAATTTTTCCAAGTAACAACTCTCCAATGTCTGTGGGTAATTCCTCTGGGAACAACATAATACTCCCAAGGTTAAATACTACGTTGACAGAGCCAAACCTTGACACTCAGAAACGTTCGTTTCAGCTATTTGGCCATACTATTCAATTAGAACAACCTGCTGCTGATGAAAGTGGCGCAAGAGATGATGGCAATAATAGAGCCATTGACAACAAGTGA 1545 0.5074 MPPRAPSTSALPSKPTSIPPKFWRACAGISAQEPPIVNSRVYYFPQGHIDQAASEPQNLSPLVYSTPFIHCRVSAVNFFADPNTDEVFLKILLRPVAGLAQDFPPIADAAEGNGDDEKVESYAKVLSLSDADNRGGFSVPKSCAEMIFPPLNSEDEILPQTFSMTDLHGTAWEFRHIYRGTPKRHLFTTGWKNFVDSKILISGDTLIFMKDTDGKVFVGIRRNMSLDEGEKGKEEVVMSEGFARKQKGRVSSASVAKAMELAAQNKPFEVVYYPNVGWGEFVLMAEDVEVKVNDILWRVGMKVLAKIRATFDSSYTTSFYGTVSGVSVPANDQPWSGSPWRMLQITWNDTGMLKKANFVSPWQVVELLSDAPSVPAALVPPTKKFRTTDGEEEPFLSRPTFPIPDSAKGLLKEVLLSCYGKTSPAGMQGQGARHDVSATPTCPIFPSNNSPMSVGNSSGNNIILPRLNTTLTEPNLDTQKRSFQLFGHTIQLEQPAADESGARDDGNNRAIDNK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60436g00009 514 Gene3D - 297 371 - -
Stsc60436g00009 514 Gene3D - 119 224 IPR015300 -
Stsc60436g00009 514 SMART B3_2 122 224 IPR003340 GO:0003677
Stsc60436g00009 514 CDD B3_DNA 121 222 IPR003340 GO:0003677
Stsc60436g00009 514 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 491 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc60436g00009 514 SUPERFAMILY DNA-binding pseudobarrel domain 118 222 IPR015300 -
Stsc60436g00009 514 MobiDBLite consensus disorder prediction 498 514 - -
Stsc60436g00009 514 Pfam Auxin response factor 258 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc60436g00009 514 Pfam B3 DNA binding domain 123 223 IPR003340 GO:0003677
Stsc60436g00009 514 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Stsc60436g00009 514 MobiDBLite consensus disorder prediction 492 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60436g00009 Stsc-Chr60436 57499 59713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60436g00009 6 514 B3 DNA Binding Superfamily AT1G77850 36.111 6.23e-92 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc60436g00009 B3 8.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60436g00009 - - aip:107607847 625.935