Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60436g00008 ATGCCCCGCGGTGCTCCCTCAACCTCAGCATCGCCATCGAAGCCAACCCCTATTCCCGCCAAATTCTGGCGCGCATGTGCTGGAATCTCGGCGCAGGAGCCACCAGTGGTGAACTCTAGGGTTTACTACTTTCCACAAGGACACATCGACCAAGCTGCGTCCAAACCACGAAACCTTTCACCTCTCGTTTACTCCAAGCCGGTCATCCCTTGCCGTGTCTCCGCCGTCAACTTCTTCGCCGACCCTAACACCGACGAGGTCTTTCTCAAGATTCTTCTCCATCCTGTCGCTGTTGGATCTTCTACCGCTCAAGATTTTCTTCCGGCCACCGAAGGCAGCGGCGGCAACGGTAACGGCAATGGCAACGATGAAAAGGTTCAGTCGTGCGCCAAGATTCTCACGCGGACCGATGCGAACTTAGGCGGAGGGTTTTCGGTGCCGAGGGCATGTGCGGACTTGATCTTCCCACCGCTGAACTTTGAAGACGATCCGCCGGTGCAGACGCTTCGCATAACCGACCTCCACGGCGCCGTTTGGGAGTTCCGCCACATCTACCGCGGGACACCGAAGCGGCACCTCTTCACTTCAGGCTGGAGCAAGTTCGTCGACAGCAAGATGCTTATCTCCGGCGATTCTGTGATCTTCATGAAGGATTCTGATGGGAGGATGTTCGTCGGGCTTCGCCGAAACATGTCGCCGGACGATGGCCTCTCTGACGGCGAGTCGGAATGGTTAGACGCGATTTTAGGGATGGACGAGGGGGAAGAAGAAGAAGAGTTGCCGACGAAGGGGTTTGCGAGGAACGGGAAGGGGAGGGTGAGTTCGGCGTCGGTGGCCGAGGCGATGGAGTTGGCGGCGCAGAACAAGGCGTTCGAAGTTGTGTACTATCCGAGCGTGGGGTGGGGAGAGTTTGTGGTGAAGGCTGAGGATGTGGACATGACAGTGAATGGTATTGTTTGGGGTGTTGGGATGATAGTGAAGATGGCCAGAGAGAACTTCGATTATTCACGGATGACTTGGTTCCGAGGAATTGTTTCTGGTGTTTCTGTTCCCGCTCATGATCAACCCTGGAGCGGTTCTCCTTGGCGCATGCTTCAGATCACATGGGATGATCCTGCTGGAATGTTGAAGAATGCAAATTTCGTCAGTCCATGGCAGGTGGAGCTTCTTTCTGACGCACCTTCAGTTCCTGCTGCACTAGTTCCCCCTACAAAGAAGTTTAGAACTACTGATGGAGAGGAAGAAGCATTTCCTATTCCAGATTCAGCAAAGGAAATTTTGAAAGAAGCATTACTGAGTTATTATGGTAAAACTTCTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTCTCTGCTACTCTAACTTGTCCAATTTTTCCAAGTAACAACTCTCCAATGTCTGTGGGTAATTCGTCTGGGAACAACATAGTAGTCCCAAGGTTGAATACTACGTTGACAGAGCCAAACGTTGGCACTCAGAAACGTTCATTCCAGCTATTTGGCCGTACTATTCAGTCAGAACAACCTGCTGATGAAAGTGGCGCTAAAGATGACAATAGTAGAGCCATGTACAACAAGAAGTGA 1584 0.524 MPRGAPSTSASPSKPTPIPAKFWRACAGISAQEPPVVNSRVYYFPQGHIDQAASKPRNLSPLVYSKPVIPCRVSAVNFFADPNTDEVFLKILLHPVAVGSSTAQDFLPATEGSGGNGNGNGNDEKVQSCAKILTRTDANLGGGFSVPRACADLIFPPLNFEDDPPVQTLRITDLHGAVWEFRHIYRGTPKRHLFTSGWSKFVDSKMLISGDSVIFMKDSDGRMFVGLRRNMSPDDGLSDGESEWLDAILGMDEGEEEEELPTKGFARNGKGRVSSASVAEAMELAAQNKAFEVVYYPSVGWGEFVVKAEDVDMTVNGIVWGVGMIVKMARENFDYSRMTWFRGIVSGVSVPAHDQPWSGSPWRMLQITWDDPAGMLKNANFVSPWQVELLSDAPSVPAALVPPTKKFRTTDGEEEAFPIPDSAKEILKEALLSYYGKTSPAGMQGARHDVSATLTCPIFPSNNSPMSVGNSSGNNIVVPRLNTTLTEPNVGTQKRSFQLFGRTIQSEQPADESGAKDDNSRAMYNKK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60436g00008 527 SMART B3_2 129 231 IPR003340 GO:0003677
Stsc60436g00008 527 FunFam Auxin response factor 127 231 - -
Stsc60436g00008 527 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Stsc60436g00008 527 SUPERFAMILY DNA-binding pseudobarrel domain 125 229 IPR015300 -
Stsc60436g00008 527 MobiDBLite consensus disorder prediction 500 527 - -
Stsc60436g00008 527 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 506 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc60436g00008 527 Gene3D - 320 395 - -
Stsc60436g00008 527 CDD B3_DNA 131 229 IPR003340 GO:0003677
Stsc60436g00008 527 Gene3D - 126 231 IPR015300 -
Stsc60436g00008 527 Pfam Auxin response factor 281 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc60436g00008 527 MobiDBLite consensus disorder prediction 511 527 - -
Stsc60436g00008 527 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60436g00008 Stsc-Chr60436 46047 48182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60436g00008 6 521 B3 DNA Binding Superfamily AT1G77850 40.917 6.91e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc60436g00008 B3 1.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60436g00008 - - ahf:112730398 697.967