Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60436g00006 ATGGATAAAGAAGAAGTTACAGATATGTTAGAAATTTGTGGTGGTTGTCCTAAGATTGGAATTGAAATTTTGATTGAAAGAAATCTGATAACTGTTAGTGCAAACAATAAGTTGGAGATGCATGATTTGATTCAGGAAATGGGAAGAAATATTGTATTTCTAGAATCACCGAATAATCCAGGCAAACGAAGCAGGTTATGGTCTCAAGATGACATTGATCATGTATTGACAAATAATAAGGGGACTGAGGCCATTCAAGCTATAGTTCTAAGCTTAGTTCAACCATACGAAGCACGCTGGAGCGCCGAAGCCTTCTCCAACACCAATCAACTAAGATTACTCAAGTTATGTGAGATGCAACTTCCTCTTGGCCTCAATTGCCTTCCTTGTTCACTCAAAGCTCTTCAGTGGGAAGGATCTCCTTTGGAAACTCTACCACCTAGTAATCAATTGGATGAGCTTATTCACCTCAATTTGTCTCATAGCAAAATTGAACAACTTTGGCATGGAAAAAAGATTCTTAAGAAGCTGAGGTTTATTAATTTGAGCTTCTCCAAGAACCTAAAGAAGACTGGTGACTTTGATGGGTGTCCAAATCTTGAATCATTGGTTCTTGAAGGTTGTACAAGTTTAACCGAAATTCATACATCCCTTGCATGTCACAAGAAACTTGTTCTATTGAATTTGAAAGACTGCAAAAGGCTCAAAGCTTTTCCAAGGAAACTGGAGATGTGTTCATTGAAGTATTTAAATCTCTCTGGTTGCTCAGAACTGAAAATAGTCCCCGATTTTGGCGAAAACATGGAACTTCTGTCAGTGCTTTCTTTAGAGGGAACTGCTATAACAAAGCTATCATCATCAGTGGGAAGTCTAGTTGGCCTTACTCAGTTGAAGTTAAACAATTGCAAGAATCTTGTTTGCCTTCCAGATACCATTCATAAACTGAAGTCTCTCAAGATCTTGGATGTTTCCAGTTGCTCAAGAATTCGCAGCTTGCCAGAGTGCCTTAAGGAAATCAAGTGTTTGGAGGAACTTTGTGCAAGTGAAACCGCAATCGAAGAGCTCCCTTCAAGTGTCTTTTATCTAGAAAATCTCAGAGAAATCTCATTTTCTGGTTGCAAGGGACCAGTATCTAATTCAATGGACATGTTTCAACCTTTTAAGTGGTTGTTTGGAAGTCAACAAGCTTCAACTGGATTTCATTTGCCACCTTCAATCTCCTGCTTACACCATTTGCACAGAGTAGATTTTAGTTACTGCAATTTATCTGATGAATCAATGCCAGATGATTTTTTCCATTTACCTTCATTGAGGATTTTAGATCTCTCTGGCAATGACTTTGTTAGCATGCCTAGCAGCATATCCAAACTTCCAATTCTTCAGTATCTGTATATAAATTGGTGCAAAAATCTTCAATCTTTGCCAGAGCTTCCATCAAGCATAACAGAATTGGATGCAAGCAACTGTGCCTCACTTGAAGATTCCAAACTCAATCCATCCAAGCCATGCAGTCTCTTTGCATCACCTAAGCAATGGCACTTTCCTATACAAGAGATCCAACAATTTTTCGAGGAAATCAGAATTCCAGAAGCAAGATTTGACATGCTTATAACTGGGAGTGAAATTCCATCATGGTTTGTGCCTCAAAGATGCATTTCCTTTGCCAAGATACAAATCCCTCAAAACTGTCCTGTAAATGATTGGGTGGGATTTGCACTGTGTTTCATGTTGGTAAGTTATGCAGATCCACCTGAAGTGTGCCATCATGAAGTTGAATGTTATTTGTTTGGGCCTCAGGGTAAGATGTTCATGAGCACCAGGATTTTACCTCCAATGGAGCCATGTTGCCCTCACCTTTACATTCTTTATTTGTCCATTGACAAATTTCGTGACAGAATTTATGAAGGTGGTTACTTCTTCAAAGAAATCGAATTTGTGTTGAAACGTTATTGCTGCCAATCATTACAAATAGTCCGCTGCGGGTCTCGCTTGGTGTGCAAGCAAGATGTTGAAGATATTTTTGGAAATCATTCCTAG 2037 0.3888 MDKEEVTDMLEICGGCPKIGIEILIERNLITVSANNKLEMHDLIQEMGRNIVFLESPNNPGKRSRLWSQDDIDHVLTNNKGTEAIQAIVLSLVQPYEARWSAEAFSNTNQLRLLKLCEMQLPLGLNCLPCSLKALQWEGSPLETLPPSNQLDELIHLNLSHSKIEQLWHGKKILKKLRFINLSFSKNLKKTGDFDGCPNLESLVLEGCTSLTEIHTSLACHKKLVLLNLKDCKRLKAFPRKLEMCSLKYLNLSGCSELKIVPDFGENMELLSVLSLEGTAITKLSSSVGSLVGLTQLKLNNCKNLVCLPDTIHKLKSLKILDVSSCSRIRSLPECLKEIKCLEELCASETAIEELPSSVFYLENLREISFSGCKGPVSNSMDMFQPFKWLFGSQQASTGFHLPPSISCLHHLHRVDFSYCNLSDESMPDDFFHLPSLRILDLSGNDFVSMPSSISKLPILQYLYINWCKNLQSLPELPSSITELDASNCASLEDSKLNPSKPCSLFASPKQWHFPIQEIQQFFEEIRIPEARFDMLITGSEIPSWFVPQRCISFAKIQIPQNCPVNDWVGFALCFMLVSYADPPEVCHHEVECYLFGPQGKMFMSTRILPPMEPCCPHLYILYLSIDKFRDRIYEGGYFFKEIEFVLKRYCCQSLQIVRCGSRLVCKQDVEDIFGNHS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60436g00006 678 SUPERFAMILY "Winged helix" DNA-binding domain 3 76 IPR036390 -
Stsc60436g00006 678 Pfam Leucine Rich Repeat 317 337 IPR001611 GO:0005515
Stsc60436g00006 678 Pfam C-JID domain 538 671 IPR045344 -
Stsc60436g00006 678 SMART LRR_typ_2 434 457 IPR003591 -
Stsc60436g00006 678 SMART LRR_typ_2 268 291 IPR003591 -
Stsc60436g00006 678 SMART LRR_typ_2 151 176 IPR003591 -
Stsc60436g00006 678 SUPERFAMILY L domain-like 88 496 - -
Stsc60436g00006 678 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 246 374 IPR044974 GO:0006952
Stsc60436g00006 678 Gene3D Ribonuclease Inhibitor 387 508 IPR032675 -
Stsc60436g00006 678 Gene3D Ribonuclease Inhibitor 99 243 IPR032675 -
Stsc60436g00006 678 Gene3D Ribonuclease Inhibitor 244 384 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60436g00006 Stsc-Chr60436 31135 33811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60436g00006 1 370 WRKY Transcription Factor Family AT4G12020 39.793 1.13e-66 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60436g00006 - - gmx:100815486 918.687