Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60436g00002 ATGACCAGTTCCGGCCGATGTCAACGGAGGAAGGACATGGCGGCTTCCGGTGCTCAACAACGGCCAGATTCCGCCGAGCCTACGCTGTCGCCGGTGGATTCTCCGGCGGAATTGCCGGGTATCTCCAATAATTCCGCTGTGTACGAAATTGACTACTTTTCTCAGGCGAGGAAGGCGCTGAGCGAGCGTTCCCCTTATGAAGAAGAAGCGTCCACTTCTGGGGTGGTTACTCTGCCAAGTGGATTATCTAGTTTGCTGAACCGCCATGGGGATAACCGTCGGCGGCATAAGAAGGTTCGGTCCGGGGGCGAGAAGAAGAAGAAGAAATCATCTAGGGGGAGCGAGAAGGCACGTGCTTTCAACATTTGGGACGAGACTGAGGAGTATTTTAGGGACTTGTCATTGAGTGATATCGATACCTTAGTGGATGTTTCTTCGCTGTCTAGGTTAGCTTCTGGCGAGTGTTTCTCTATTCCGGTTTTGGGGAATTCTCCGAGACTCAATATAGTAGTTAATAGTAGTGAGGAGGAAAAGAAAGATGCAATGAAAGTGGACTTAGTTAGTGGCGAGGATGATAAGAAGGTTGATGAAGACTTGGGAAGTGAGGAATGTATAGTGGGAGTGGAGTCTATTGACAATGTTGCTGCCGAAAACGGTTTGCCTCAGGATGATGGAAAAAATGTCTCGTGTGTTAGTTTAGAGTGGCTATTAGGTTGTAGGAGTAAGGTTTCTTTGACTTCTGAGCGCCCTAAGAAGAAAAGGAAGCTTTTGAACGGGGATGCTGATTTACAGAAAGTTCAAATGACCAGTCCTAGTGATGGGGATGGACCCTTTTGTCATTACTGTGGCACTGGAGATGCCAGCAGAGATTTGAACCGGTTGATTGTTTGTGCCTCTTGCAAAGTGGCAGTTCATCAAAAGTGCTATGGTGTGCAAGATGGCTTAGATGAGTCTTGGTTGTGCTCATGGTGTAAGCTAAAACGTGGTGTTGAGGGGTCGGTTAATCCTTGTGTGCTTTGCCCGAATAAAGGTGGTGCTTTGAAACCAGTTGATGGCACTGTGGAAGGTGTTGAGTCTGTGAAGTTTGTGCACTTGTTTTGTTGTCTGTGGATGCCCGAGGTTTATGTAGACGATTTGAAGAAGATGGAACCTGTTATGAATGTCGGGTCGATAAAGGAAACCCGGAGAAAATTGGTGTGTAACATTTGCAAACAGAAGTGGGGTGCATGTGTTCGGTGTAGCCATGGAACCTGCAGGACTTCTTTCCATCCGTTATGTGCAAGGGAAGCTCGACATAGGATGGAGGTGTGCGCTAAGTATGGAGATGACAATATAGAGTTGCGGGCTTTTTGCCTGAAACACTCAGATTCACAAGATAACAGGGGCATCTTGCCATTAGGAGACTCCCTTGCTATTGGCAATACATTTCTTGAAGCTAATGGCCTTCCAGTAAATAGCGAGCACAAGTTGAAAATTGGATGTGGTAGTCCCAATAAGTTGAACCACAATGGACTGCAAGATGTAGGACTGTCTGATTGCAGGTTAATTGCCAGTGACCTGTCTGGATGTGGTGCTGTGCAGCAACATAATGTTGGAATGGTAGGGAAGACCAATGAGAATGGTGTTGCATCTGACTCCCTCAGTTTTGCACTTGTTTTAAAGAAGCTGATAGACCGTGGAAAAGTTGATGCAAAGGATGTAGCAATGGAGATTGGAATTGCACCAGATGCATTAACTGCAAATATCAATGAAGCTTATATGGACCCTGATGTGGTTGAGAAAATAGTCAATTGGCTAAAAGCTCATGTGTACACTGCTGCGTTTCATAAAGGTTTAAAAGTCAAATTCAAACCACCTGTTCCTTCCAAGGATGAAAGTGAAGCTGCAGAACGTTCTGTTGCTCTTCCAATATCTGATTCGGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTACCACCAAGGAGGAGAACTGTCAGCAACATTAGAATTTCAAAGGATAATAAAGCGATATGTTCATCCGAGGGGGTTACTCCAGATCTATTCAGAGCTGATCAGCTGGACCATGAAAATCCAGGAAGTTCTAATGAAGGGTCTCCAAATGCTACTGTAGTGGACATAACCAAGTCTGGGGATATGCTTCCGAAAGTTCAAGGGAATGAAGATAAACCACACAAATCCAACTTATCTGAATGTGTTTCAGAAGAAATGTCCAAGCTCTATTTGCAGAATGGTTCAATGTTTTGTGATGGCTTCTGTCCTCTTTATTCTGCTGCAAAACTTCCTGATTGTGGTTCCATAAAGGTGGAAGCCAGCTCTAGCTACATTCACCCATCCATCAAGAAGTTGCTGCAGATTCATAATGGGGTGAACTTGGAGGATATTTCAGGTCCATGTGAGAAGAGTATTTCTACTTGGGTTAAGTCTGCTGGCTCTAGTTGCTACTCAAGTACTGATAATCAGCAATTAATGTGCACTGGTATTTCCAAGCCTGGTCAAGGAAATACAGAGCAGTTGCATGGCTCTGGGAAAATGGAACTTTTGGAATTTTCTCCAGAAGATGAAGTGGAAGGGGAACTTATATTTTTACAGCATAGATTATTGCAGAATGCAGTTGCAAGAAAGAAGTTTACTGATAACTTAATCTCCAATGTTGCGAAGAGCTTGCCACAGGAGATTGATGCAGCACATCAGCAAAGGTGGGACTCTGTGATTGTTAATCGATATCTGCGTGATCTTAGGGAGGCAAAAAAGCTAGGCAGGAAAGAAAGAAAGCACAAGGAAGCACAAGCTGTTCTGGCTGCTGCAACTGCTGCGGCTGCAGCATCTTCTAGGGTTTCTTCCTTCCGAAAAGACTCTATAGATGAATCTATGCAACAGGAGAATTTGTTGAAGTTGGATGCTTTAAATGGGAGGAATGGTGCTTGTTCTCAGCCAATGCCAAGAGCTAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACATCATCAGAGAAATATTCTGATTTCAGCTTGCCAACCTCAGAATATTCTAAGGAGCAATCTAAATCATGTGATATCTGCAGACGATCTGAGACTTTGTTTAACCCCATACTTGTCTGCTCTGGTTGCAAGGTTGCAGTGCACTTGGACTGTTATCGAAGTGTGAAAGAAACAACTGGCCCATGGTACTGTGAATTATGTGAAGATGTAACATCCAGAAGCAGTGCAGCATCTGCCATCAATTTCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCCCTTTGTAGTGGTACTACTGGAGCTTTTAGGAAATCTTCTGATGGTCAATGGATTCATGCGTTCTGTGCTGAGTGGGTTTTCGAGTCAACATTCAGAAGAGGCCAAATAAATCCAGTTGAAGGAATGGAGTCTGTGCTGAAGGGAGTTGACAAATGTTGCATTTGCCACTGCAAGCATGGTGTTTGTATGAAGTGTTGCTATGGCCATTGTCAAACCTCATTCCATCCATCATGTGCTAGAAGTGCTGGTTATTATATGATTGTGAGGACTACTAGTGGCAAACCACAACACAAGGCTTACTGTGAAAAGCACAGTTTGGAGCAAAAGGCAAAGTCTGAAAAACATGGAATTGAAGAGTTTAAAAGTATGAAGCAAGTTCGGGTTGAACTGGAGAGATTACGTCTCCTATGTGAGAGAATTGTCAAACGTGAAAAATTAAAGCGCGAATTGGTTCTTTGCTCGCATGATATTCTTGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTGCTCGTTCATAGCCCTTTCATCCTTCCAGATGGTAGTTCAGAATCAGCTACCACGTCCCTTAGAGGAAACACCGAGGGATACAGATCATGCAGTGATGCAATCCAAAGATCCGATGATATAACTGTGGACAGTTCCGTTTCGGACAAGCACCGTCTAAGAGCTGCTGTCTCCATGGACACTGATCCCAAATTGGACGATGACTGCTCAACCTCACAAAGTTGCTATAATCACAAGATCCCAGAGAGAGTTCAATTTTCTGGCAAGCAGATTCCTAAAAGAGCTTATATCGCATCACGCAATATTTCAGATGAGAGTTCTGGATTGAGATCCAAATCTAGAAAGCAAGCAGACACATTTGGCAAAGAGATCGTAATGACGTCCGATGAAGCGTCTATGAAGAATTTGAGGTTACCAAAAGGTTATGCATATGTTCCTGCTGATTGTCTGTCAAATGATAAGCAGTTTAACGAGAATGTTTAA 4245 0.4389 MTSSGRCQRRKDMAASGAQQRPDSAEPTLSPVDSPAELPGISNNSAVYEIDYFSQARKALSERSPYEEEASTSGVVTLPSGLSSLLNRHGDNRRRHKKVRSGGEKKKKKSSRGSEKARAFNIWDETEEYFRDLSLSDIDTLVDVSSLSRLASGECFSIPVLGNSPRLNIVVNSSEEEKKDAMKVDLVSGEDDKKVDEDLGSEECIVGVESIDNVAAENGLPQDDGKNVSCVSLEWLLGCRSKVSLTSERPKKKRKLLNGDADLQKVQMTSPSDGDGPFCHYCGTGDASRDLNRLIVCASCKVAVHQKCYGVQDGLDESWLCSWCKLKRGVEGSVNPCVLCPNKGGALKPVDGTVEGVESVKFVHLFCCLWMPEVYVDDLKKMEPVMNVGSIKETRRKLVCNICKQKWGACVRCSHGTCRTSFHPLCAREARHRMEVCAKYGDDNIELRAFCLKHSDSQDNRGILPLGDSLAIGNTFLEANGLPVNSEHKLKIGCGSPNKLNHNGLQDVGLSDCRLIASDLSGCGAVQQHNVGMVGKTNENGVASDSLSFALVLKKLIDRGKVDAKDVAMEIGIAPDALTANINEAYMDPDVVEKIVNWLKAHVYTAAFHKGLKVKFKPPVPSKDESEAAERSVALPISDSGLLDPVAVKSVPPRRRTVSNIRISKDNKAICSSEGVTPDLFRADQLDHENPGSSNEGSPNATVVDITKSGDMLPKVQGNEDKPHKSNLSECVSEEMSKLYLQNGSMFCDGFCPLYSAAKLPDCGSIKVEASSSYIHPSIKKLLQIHNGVNLEDISGPCEKSISTWVKSAGSSCYSSTDNQQLMCTGISKPGQGNTEQLHGSGKMELLEFSPEDEVEGELIFLQHRLLQNAVARKKFTDNLISNVAKSLPQEIDAAHQQRWDSVIVNRYLRDLREAKKLGRKERKHKEAQAVLAAATAAAAASSRVSSFRKDSIDESMQQENLLKLDALNGRNGACSQPMPRAKETLSRVAVTRTSSEKYSDFSLPTSEYSKEQSKSCDICRRSETLFNPILVCSGCKVAVHLDCYRSVKETTGPWYCELCEDVTSRSSAASAINFWEKPYFVAECALCSGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQINPVEGMESVLKGVDKCCICHCKHGVCMKCCYGHCQTSFHPSCARSAGYYMIVRTTSGKPQHKAYCEKHSLEQKAKSEKHGIEEFKSMKQVRVELERLRLLCERIVKREKLKRELVLCSHDILAFKRDHVARSVLVHSPFILPDGSSESATTSLRGNTEGYRSCSDAIQRSDDITVDSSVSDKHRLRAAVSMDTDPKLDDDCSTSQSCYNHKIPERVQFSGKQIPKRAYIASRNISDESSGLRSKSRKQADTFGKEIVMTSDEASMKNLRLPKGYAYVPADCLSNDKQFNENV 1414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60436g00002 1414 ProSitePatterns Zinc finger PHD-type signature. 1017 1060 IPR019786 -
Stsc60436g00002 1414 SUPERFAMILY FYVE/PHD zinc finger 267 327 IPR011011 -
Stsc60436g00002 1414 PANTHER PHD FINGER PROTEINS 61 952 - -
Stsc60436g00002 1414 MobiDBLite consensus disorder prediction 90 107 - -
Stsc60436g00002 1414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 992 1071 IPR013083 -
Stsc60436g00002 1414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 331 IPR013083 -
Stsc60436g00002 1414 SMART PHD_3 278 325 IPR001965 -
Stsc60436g00002 1414 SMART PHD_3 399 455 IPR001965 -
Stsc60436g00002 1414 SMART PHD_3 1016 1061 IPR001965 -
Stsc60436g00002 1414 SMART PHD_3 1137 1191 IPR001965 -
Stsc60436g00002 1414 ProSiteProfiles Extended PHD (ePHD) domain profile. 334 455 IPR034732 -
Stsc60436g00002 1414 Pfam PHD-zinc-finger like domain 1084 1190 - -
Stsc60436g00002 1414 Pfam PHD-zinc-finger like domain 336 454 - -
Stsc60436g00002 1414 ProSitePatterns Zinc finger PHD-type signature. 279 324 IPR019786 -
Stsc60436g00002 1414 CDD ePHD 1085 1190 - -
Stsc60436g00002 1414 MobiDBLite consensus disorder prediction 66 87 - -
Stsc60436g00002 1414 MobiDBLite consensus disorder prediction 1 41 - -
Stsc60436g00002 1414 ProSiteProfiles Zinc finger PHD-type profile. 276 327 IPR019787 -
Stsc60436g00002 1414 ProSiteProfiles Extended PHD (ePHD) domain profile. 1082 1191 IPR034732 -
Stsc60436g00002 1414 Coils Coil 1209 1229 - -
Stsc60436g00002 1414 SUPERFAMILY FYVE/PHD zinc finger 1006 1061 IPR011011 -
Stsc60436g00002 1414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1082 1192 IPR013083 -
Stsc60436g00002 1414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 457 IPR013083 -
Stsc60436g00002 1414 MobiDBLite consensus disorder prediction 61 117 - -
Stsc60436g00002 1414 ProSiteProfiles Zinc finger PHD-type profile. 1014 1063 IPR019787 -
Stsc60436g00002 1414 Pfam PHD-finger 292 325 - -
Stsc60436g00002 1414 Pfam PHD-finger 1028 1061 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60436g00002 Stsc-Chr60436 7368 16810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60436g00002 273 440 C2H2 Transcription Factor Family AT3G14740 31.395 7.34e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc60436g00002 zf-HC5HC2H_2 8.5e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60436g00002 - - gmx:100775631 1816.97