Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60435g00008 ATGGGGGAGGTGGCAGTAATGCGCTCTGAACCACTTCAGTTTGAGTGCAATGATATGAAGCATCTGACAGAGGGAGACACCTATGCTACCGAAACAAATGCAGAGCTTGATCATGGGGAAGAATCAAGCCAGTCAACTGATAATGAAAAAACTAATGACTTACCTGAGAAAGGATACATGGAATACGGATGTCAACATTACCGGAGAAGATGCCGCATCAGGGCCCCCTGTTGCAATGAGGTTTTTGATTGCCGCCACTGTCACAATGAGGCAAAAAATGATATCAGCATTAACCAGAAGCTTAGACATGACATTCCGCGCCACCAAGTCAAGCAGGTGATATGTTCACTTTGTGGGACCGAACAAGAGGTTCAGCAGAACTGTATCAATTGTGGTGTTTGTATGGGCAAATACTTCTGTGGAACATGCAAGCTTTTTGATGATGATGTTTCGAAGCAACAGTATCATTGCAGTGGATGTGGAATTTGCAGAACTGGAGGACGTGAGAATTTCTTCCATTGCTACAAGTGTGGTTGTTGCTATTCAATCCTACTGAAAGATAGTCACCCTTGCATTGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCCAGAAATGATATCACTGTTATGCCCTGTGGACATACAATCCATAAGAGCTGCTTGAATGAAATGAGAGAACATTACCAATATGCATGCCCTTTGTGCTCAAAGTCAGTGTGTGATATGTCGAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCCACACCAATGCCTGAACCATATCAGAATAAAATGGTCAGTGTTCATTTCCTCGTTGTCTCTTAG 849 0.4276 MGEVAVMRSEPLQFECNDMKHLTEGDTYATETNAELDHGEESSQSTDNEKTNDLPEKGYMEYGCQHYRRRCRIRAPCCNEVFDCRHCHNEAKNDISINQKLRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGRENFFHCYKCGCCYSILLKDSHPCIEGAMHHDCPVCFEYLFESRNDITVMPCGHTIHKSCLNEMREHYQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVSVHFLVVS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60435g00008 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Stsc60435g00008 282 SUPERFAMILY RING/U-box 199 248 - -
Stsc60435g00008 282 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Stsc60435g00008 282 CDD RING-H2_Pirh2-like 199 243 - -
Stsc60435g00008 282 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 40 273 - -
Stsc60435g00008 282 SMART ring_2 200 242 IPR001841 -
Stsc60435g00008 282 Pfam Ring finger domain 199 242 IPR001841 -
Stsc60435g00008 282 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Stsc60435g00008 282 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Stsc60435g00008 282 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Stsc60435g00008 282 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Stsc60435g00008 282 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Stsc60435g00008 282 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60435g00008 Stsc-Chr60435 56626 62199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60435g00008 55 272 C2H2 Transcription Factor Family AT3G18290 37.220 2.69e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60435g00008 K10144 - gmx:100803569 540.036