Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60434g00045 ATGGATCAAATTACAGCACACGGACATTCGCTTCCGCCTCCATTCCACACAGCGAGAGATCTGTTGCACCACCACCACCAGCAGCAGCAGCAGCAGCAGTTTCACTCCTTACAGCAGCAGCAGCAACCAACAGAAGACGAGCAAAGCGGAAGCAGCGGAGGACTCAACCTCGCTCACAAGAGGGAAAGAGAAGATAACAACAACAACAACAGCGACAGCAAAGATGGAACACCGGGAGGAGGAGGATCTGGTGAGACAGAAATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAGAACAAACCGAAGCCACCGATCATCATCACCCGGGACAGCGCCAATGCCCTAAAGACACACGTGATGGAAGTTGCAGACGGTTGTGACATCGTGGAGAGCGTCTCCAACTTCGCAAGGAGGCGCCAAAGAGGGGTCTGCATCATGAGCGGCACCGGCACCGTCACCAACGTCACACTCAGACAACCGGCCTCCTCTGGAGCCGTTGTGTCCCTCCATGGAAGGTTCGAGATCTTGTCCCTCGCGGGATCCTTCCTCCCTCCTCCAGCTCCCCCCGCAGCCTCCGGCTTAACCATATATTTAGCCGGAGGGCAAGGGCAGGTGGTCGGAGGGAGCGTGGTGGGGACACTGATTGCTTCGGGGCCAGTGGTGATCATGTCAGCTTCCTTCAGCAACGCTGCGTATGAAAGGCTTCCTTTGGAGGAAGAAGACCCTTCCATGCCCTTGCAAGGTGGTGGCGCTGGTGGCGGCGGCGGGTCAATCGGGTCCCCTGGAAGTGGTCAGCAGCAGACACAGCAGCAGATGTTAGGGGACGCAACTGCTCCGCTGTTCCATGGTTTGAATCCGAATCTTCTGAATTCAGTTCAGATGCCAACGGAGGCTTTCTGGAATACTGGTCGCTCTCCTTATTGA 930 0.5613 MDQITAHGHSLPPPFHTARDLLHHHHQQQQQQQFHSLQQQQQPTEDEQSGSSGGLNLAHKREREDNNNNNSDSKDGTPGGGGSGETEMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVSLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLIASGPVVIMSASFSNAAYERLPLEEEDPSMPLQGGGAGGGGGSIGSPGSGQQQTQQQMLGDATAPLFHGLNPNLLNSVQMPTEAFWNTGRSPY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60434g00045 309 ProSiteProfiles PPC domain profile profile. 114 251 IPR005175 -
Stsc60434g00045 309 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 243 - -
Stsc60434g00045 309 MobiDBLite consensus disorder prediction 242 274 - -
Stsc60434g00045 309 PIRSF ESCAROLA 17 308 IPR014476 GO:0003680
Stsc60434g00045 309 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 303 IPR014476 GO:0003680
Stsc60434g00045 309 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 231 IPR005175 -
Stsc60434g00045 309 CDD DUF296 118 185 IPR005175 -
Stsc60434g00045 309 MobiDBLite consensus disorder prediction 1 108 - -
Stsc60434g00045 309 FunFam AT-hook motif nuclear-localized protein 117 244 - -
Stsc60434g00045 309 Gene3D - 117 245 - -
Stsc60434g00045 309 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60434g00045 Stsc-Chr60434 248362 250361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60434g00045 1 309 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 57.879 6.10e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60434g00045 - - gmx:100781436 423.32