Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60434g00039 ATGAGAAAACACCGACAAATTCACCTCTCTCATGCTTTCTTATGCGCCATTCTCTGCTTGGTTTCTTGTGTAACGGTATCACCGGCCACTGAGAGAGAGATTCTGCAACAATTCAAGGGCAACATCACAGAGGACCCTTTCAACAGCTTGAGTTCATGGGCTCCCAGTGGAAACCCCTGCCAAGATTACAGAGGTGTTTACTGCAACGATGAAGGTTTTGTGGAAAGGATCGTTCTTTGGAACACTAGCTTGGCTGGGGTGTTGTCTCCAGCATTGTCTGGTTTGAAGAGATTGAGGGCATTGACATTGTTTGGGAACAGGTTCAAGGGTAACATCCCAGATGATTATGCTGATCTTCACACATTGTGGAAGATCAATTTGAGCTCCAATGCGTTGTCTGGTTCAATCCCAGAGTTCATTGGTGATTTGCCTAACATTCGGTTTCTAGATTTGTCCAAGAATGGCTTCACTGGGGAGATACCTCAGGCCTTGTTCAGGTACTGTTACAAAACCAGGTTTGTGTCTCTTTCTCATAACAACCTTGCTGGTTCAATTCCTGTGTCATTGGTGAATTGTGCCAACCTTGAAGGAATTGATCTTTCTTATAATAATCTGACCGGCGGTGTCCCCTCGCGGGTTTGTGATATTCCAAGCTTGTCATATGTGTCACTGAGAAGCAATGCCTTATCAGGGAGTGTGCAAGGTCTCATATCACCTTGCCGGAGTTTGAAACACTTGGATTTCGGTAGTAATATGTTCAGGGATTTGGCTCCATTCAGCATCCTTGAATTGCAAAATCTTACTTATTTCAATGTATCCTATAATAGGTTTGGAGGAAGTATTCCTGAGATCACAACCTGTAGTGAGAGATTAGAATTCTTTGATAGTTCCGGGAATGACTTGGATGGAGAATTTCCCTCCAGCATAGTTAGATGCAAGAACCTAAAGGTCTTGGCCTTGGGATTGAATAGGCTAAAAGGGAGTATCCCAGTTGATATTCAGCAATTGCAAAAGTTACTAGTTATCAATTTGGGTAATAACTCAATAAGTGGAATGATTCCCAATGGTTTTGGCAACATTGAGCTGCTTGAAGTTCTAGATTTGCACAATTTAAACCTCATTGGTGAAATTCCAGCTGATATAAGCAATTGCAGATTTCTTCTTCAGTTGGACCTTTCTGGTAATGGCTTAGAGGGTGAGATTCCTCAGACCCTATACAACATGACATACTTGGAATCCCTCAACTTACATCAAAACCGGCTCAATGGTAGCATCCCACCTAGCCTAGGAAACCTGTCAAGGTTGCAATACCTAGATCTGTCACATAATTCACTTTCTGGTTTAATCCCATCTTCTCTTGGAAATTTAGGAAACATGACTCATTTTGATATTTCATTCAACAATCTATCCGGTCTCATTCCACAAATTGAAACCATACAGCATTTTGGTCCATCTGCTTTTTCCAATAATCCTTTTCTCTGTGGTGCTCCTTTGGACACCTCTTGCTCGGCGAAAGGAACTACTTCACCTTCAGCACCTGGGAGGACTAAAGTTCTAAGCATATCGGCAATTGTTGCAATTGTTGCTGCAGCTGTGATTCTTGCAGGGGTTTGTTTGGTGACCATCATGAATATCAGGGCTCGTCGTCGAAAAAAAGACAGCGATGAGATCATGGTTGTCGAGAGCACACCCCTTGGATCATCAACCGAATCAAATGTTATAATTGGAAAGCTGGTTCTGTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAAGCAGGTACAAGAGCATTGCTTGATAAAGAGTCTATAATAGGTGGTGGATCGATCGGAACAGTTTACAGAACTGATTTCGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCCGAAACCAGGAAGAATTCGAGCAGGAGATTGGACGATTAGGCAACCTCCAACACCCAAATTTAGTTTCTTTACAAGGTTACTATTGGTCCTCTTCAATGCAATTGATTCTATCAGAGTTTGTCCCTAATGGGAATCTCTATGATAATCTACATGGGGTTGGATATCCCGGGACAAGCACTAGCAGCAGCAACAGGGAGTTATATTGGTCTAGAAGGTTCCGAATCGCACTTGGTACCGCAAAAGCACTTGCCTATCTTCACCACGACTGCAGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCTTAGATCTCAAGTACGAGGCTAAGTTGTCGGATTATGGTTTAGGAAAGTTGCTCCCCATTTTGGACAATTATGGTCTGACCAAGTTCCACAATGCGGTCGGGTATGTCGCACCGGAGTTGGCTCAAAGCCTAAGGCAGAGTGAGAAGTGTGATGTGTACAGTTTTGGGGTCATTCTTTTGGAGCTGGTTACTGGTAGGAAGCCAGTAGAAAGTCCAACTTCAAGTGAGGTGGTGATCTTGTGTGAATATGTAAGAAGTTTGTTAGAGGTTGGCTCAGTTTCAAACTGCTTTGACAGAAACTTACTGGGATTTGCTGAGAACGAGTTAATTCAGGTTATGAAGCTGGGACTAATTTGTACCACGGAGGATCCATTAAGGAGACCAAGTATGGCTGAGGTTGTCCAGGTTCTTGAGTCCATTAGAAATGGATTGGGAGCACACTAA 2667 0.4286 MRKHRQIHLSHAFLCAILCLVSCVTVSPATEREILQQFKGNITEDPFNSLSSWAPSGNPCQDYRGVYCNDEGFVERIVLWNTSLAGVLSPALSGLKRLRALTLFGNRFKGNIPDDYADLHTLWKINLSSNALSGSIPEFIGDLPNIRFLDLSKNGFTGEIPQALFRYCYKTRFVSLSHNNLAGSIPVSLVNCANLEGIDLSYNNLTGGVPSRVCDIPSLSYVSLRSNALSGSVQGLISPCRSLKHLDFGSNMFRDLAPFSILELQNLTYFNVSYNRFGGSIPEITTCSERLEFFDSSGNDLDGEFPSSIVRCKNLKVLALGLNRLKGSIPVDIQQLQKLLVINLGNNSISGMIPNGFGNIELLEVLDLHNLNLIGEIPADISNCRFLLQLDLSGNGLEGEIPQTLYNMTYLESLNLHQNRLNGSIPPSLGNLSRLQYLDLSHNSLSGLIPSSLGNLGNMTHFDISFNNLSGLIPQIETIQHFGPSAFSNNPFLCGAPLDTSCSAKGTTSPSAPGRTKVLSISAIVAIVAAAVILAGVCLVTIMNIRARRRKKDSDEIMVVESTPLGSSTESNVIIGKLVLFSKSLPSKYEDWEAGTRALLDKESIIGGGSIGTVYRTDFEGGISIAVKKLETLGRIRNQEEFEQEIGRLGNLQHPNLVSLQGYYWSSSMQLILSEFVPNGNLYDNLHGVGYPGTSTSSSNRELYWSRRFRIALGTAKALAYLHHDCRPPILHLNIKSSNILLDLKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQSLRQSEKCDVYSFGVILLELVTGRKPVESPTSSEVVILCEYVRSLLEVGSVSNCFDRNLLGFAENELIQVMKLGLICTTEDPLRRPSMAEVVQVLESIRNGLGAH 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60434g00039 888 Gene3D Ribonuclease Inhibitor 169 237 IPR032675 -
Stsc60434g00039 888 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 167 505 - -
Stsc60434g00039 888 Gene3D Phosphorylase Kinase; domain 1 568 676 - -
Stsc60434g00039 888 PANTHER LEUCINE RICH REPEAT KINASE 2 78 883 - -
Stsc60434g00039 888 SMART LRR_typ_2 143 167 IPR003591 -
Stsc60434g00039 888 SMART LRR_typ_2 456 479 IPR003591 -
Stsc60434g00039 888 SMART LRR_typ_2 408 431 IPR003591 -
Stsc60434g00039 888 SMART LRR_typ_2 360 384 IPR003591 -
Stsc60434g00039 888 SMART LRR_typ_2 336 359 IPR003591 -
Stsc60434g00039 888 SMART LRR_typ_2 432 455 IPR003591 -
Stsc60434g00039 888 ProSiteProfiles Protein kinase domain profile. 600 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60434g00039 888 FunFam Putative LRR receptor-like serine/threonine-protein kinase 577 676 - -
Stsc60434g00039 888 SUPERFAMILY L domain-like 76 162 - -
Stsc60434g00039 888 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 28 166 - -
Stsc60434g00039 888 Gene3D Transferase(Phosphotransferase) domain 1 677 885 - -
Stsc60434g00039 888 CDD STKc_IRAK 606 881 - -
Stsc60434g00039 888 Pfam Protein kinase domain 602 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60434g00039 888 Gene3D Ribonuclease Inhibitor 28 168 IPR032675 -
Stsc60434g00039 888 PRINTS Leucine-rich repeat signature 432 445 - -
Stsc60434g00039 888 PRINTS Leucine-rich repeat signature 195 208 - -
Stsc60434g00039 888 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 677 887 - -
Stsc60434g00039 888 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Stsc60434g00039 888 SUPERFAMILY L domain-like 165 499 - -
Stsc60434g00039 888 SUPERFAMILY Protein kinase-like (PK-like) 601 879 IPR011009 -
Stsc60434g00039 888 Pfam Leucine rich repeat 410 469 IPR001611 GO:0005515
Stsc60434g00039 888 Gene3D Ribonuclease Inhibitor 238 509 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60434g00039 Stsc-Chr60434 216129 219186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60434g00039 30 885 Receptor kinase-like Gene Family AT1G62950 66.820 0.0 1124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Stsc60434g00039 Pkinase 5.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60434g00039 - - gmx:100800970 1444.48