Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60434g00031 ATGGCCTCCATTCTTCAATCCCCTGGCCGCTTGCTAATCGCTTTTACATGTATCTTCACAACATTCATGGGGGAGTCAAAAGTAGCAATGTCAGTATTTCGACCAAGCAACTGGGCTCTTGCACATGCTACCTTTTACGGTGATGAAACAGCTTCTGCCACCATGGGAGGAGCATGCGGGTACGGGAATTTGTTTCAAAGCGGTTATGGAACGGACACGGCAGCATTGAGCTCAAGGTTGTTCAACAATGGATATGCTTGTGGGACATGTTACCAGATAAAGTGCTACCAATCAAGTGCATGCTATAACAACGTGGCCTACACCACAGTCACCGCCACCAATCTTTGCCCTCCAAATTGGTCCGAGCCCTCCGATGACGGCGGCTGGTGCAACCCTCCGCGAGCTCATTTTGACATGTCCAAGCCAGCCTTCATGAAAATTGCCCAGTGGAAGGCCGGCATAGTCCCCATTCTATATCGCAGAGTGCCATGCGAAAGAAAGGGAGGGCTTCGATTTGCTTTCCAAGGGAATGGTTACTGGCTATTGGTGTACGTGATGAATGTGGGAGGCGGAGGAGACATTGGCAGCATGTGGGTGAGAGGAAGCAGAACTGGATGGATTCAGATGAGCCACAACTGGGGGGCTTCCTACCAAGCATTTGCTACTCTTTCTGGTCAATCTCTGTCTTTTAGGGTCACTTCATACACCACCAAAGAGACTGTTATTGCATGGAATGTTGCTCCTTCTAATTGGAACGTTGGACTAACTTACTCCTCCACTGCCAATTTCAGATAA 795 0.4906 MASILQSPGRLLIAFTCIFTTFMGESKVAMSVFRPSNWALAHATFYGDETASATMGGACGYGNLFQSGYGTDTAALSSRLFNNGYACGTCYQIKCYQSSACYNNVAYTTVTATNLCPPNWSEPSDDGGWCNPPRAHFDMSKPAFMKIAQWKAGIVPILYRRVPCERKGGLRFAFQGNGYWLLVYVMNVGGGGDIGSMWVRGSRTGWIQMSHNWGASYQAFATLSGQSLSFRVTSYTTKETVIAWNVAPSNWNVGLTYSSTANFR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60434g00031 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Stsc60434g00031 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Stsc60434g00031 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Stsc60434g00031 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Stsc60434g00031 264 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Stsc60434g00031 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Stsc60434g00031 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Stsc60434g00031 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Stsc60434g00031 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Stsc60434g00031 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Stsc60434g00031 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Stsc60434g00031 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Stsc60434g00031 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Stsc60434g00031 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Stsc60434g00031 264 SUPERFAMILY Barwin-like endoglucanases 37 187 IPR036908 -
Stsc60434g00031 264 CDD DPBB_EXPA_N 38 164 - -
Stsc60434g00031 264 Gene3D - 24 165 IPR036908 -
Stsc60434g00031 264 SUPERFAMILY PHL pollen allergen 166 259 IPR036749 -
Stsc60434g00031 264 PANTHER EXPANSIN-A15 22 259 IPR002963 GO:0009664
Stsc60434g00031 264 SMART dpbb_1 73 159 IPR007112 -
Stsc60434g00031 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Stsc60434g00031 264 Gene3D - 170 264 IPR036749 -
Stsc60434g00031 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Stsc60434g00031 264 Pfam Lytic transglycolase 73 159 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60434g00031 Stsc-Chr60434 168016 169030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60434g00031 15 264 Expansin Gene Family AT1G12560 68.000 1.12e-128 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60434g00031 - - gmx:100807807 480.33